Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.49143 * 2 1 4 4 C 1.53048 * 109.50859 * 120.05382 * 2 1 3 5 5 N 1.46965 * 109.36126 * 61.57862 * 4 2 1 6 6 C 1.46951 * 110.87967 * 59.32121 * 5 4 2 7 7 C 1.53048 * 109.36603 * 300.67597 * 6 5 4 8 8 H 1.09002 * 109.48914 * 298.43817 * 7 6 5 9 9 C 1.50695 * 109.49420 * 178.37081 * 7 6 5 10 10 H 1.07999 * 120.00188 * 275.35881 * 9 7 6 11 11 C 1.37883 * 119.99918 * 95.35143 * 9 7 6 12 12 N 1.31517 * 119.99904 * 185.84537 * 11 9 7 13 13 Si 1.86796 * 119.99798 * 5.84889 * 11 9 7 14 14 H 1.48495 * 109.47194 * 84.77039 * 13 11 9 15 15 H 1.48506 * 109.46657 * 204.76812 * 13 11 9 16 16 H 1.48499 * 109.47239 * 324.76386 * 13 11 9 17 17 N 1.46956 * 109.48756 * 239.95715 * 2 1 3 18 18 C 1.46902 * 110.99924 * 63.20005 * 17 2 1 19 19 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46610 * 300.03909 * 1 2 3 21 21 H 1.08993 * 109.47086 * 60.03883 * 1 2 3 22 22 H 1.08996 * 109.49014 * 181.53904 * 4 2 1 23 23 H 1.08994 * 109.49270 * 301.61362 * 4 2 1 24 24 H 1.00891 * 110.99734 * 295.44881 * 5 4 2 25 25 H 1.08997 * 109.49569 * 60.64560 * 6 5 4 26 26 H 1.09001 * 109.48961 * 180.69061 * 6 5 4 27 27 H 0.96995 * 119.99943 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47095 * 56.04400 * 18 17 2 29 29 H 1.09002 * 109.47181 * 296.04731 * 18 17 2 30 30 H 1.08994 * 109.47219 * 176.04675 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7225 1.2487 5 7 1.5818 -2.1183 1.2262 6 6 2.0721 -2.8118 0.0270 7 6 1.5610 -2.0894 -1.2217 8 1 0.4713 -2.1134 -1.2353 9 6 2.0949 -2.7746 -2.4531 10 1 3.0756 -2.5228 -2.8288 11 6 1.3313 -3.7231 -3.1000 12 7 1.8397 -4.4032 -4.1043 13 14 -0.4251 -4.0419 -2.5500 14 1 -1.3332 -3.0649 -3.2025 15 1 -0.8218 -5.4202 -2.9350 16 1 -0.5165 -3.8943 -1.0751 17 7 2.0203 -0.6936 -1.1992 18 6 1.6129 0.0144 -2.4203 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5145 0.8897 21 1 -0.3633 0.5132 -0.8903 22 1 3.1307 -0.6985 1.2623 23 1 1.6549 -0.2269 2.1393 24 1 0.5760 -2.1690 1.2875 25 1 3.1620 -2.8115 0.0267 26 1 1.7088 -3.8395 0.0271 27 1 1.3024 -5.0702 -4.5596 28 1 1.9632 1.0456 -2.3764 29 1 0.5260 0.0031 -2.5014 30 1 2.0472 -0.4802 -3.2890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218602714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = 8.928714 kcal Electronic energy + Delta-G solvation = -12170.165070 eV Core-core repulsion = 10193.314560 eV Total energy + Delta-G solvation = -1976.850510 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.04725 -33.63672 -33.01527 -31.02154 -27.80804 -25.95697 -24.94334 -22.38669 -21.26941 -18.31587 -17.07822 -15.56419 -14.90251 -14.38875 -13.97122 -13.70470 -13.54253 -13.04954 -12.44718 -11.79078 -11.48019 -11.44127 -11.24746 -11.08213 -10.77189 -10.59181 -10.45929 -9.92093 -9.70230 -9.44675 -8.65789 -7.79152 -7.25462 -6.14741 -4.12735 3.19702 3.28674 3.29724 4.32951 4.72743 4.95809 5.19710 5.41854 5.46250 5.67093 5.86426 5.93826 6.14198 6.18319 6.26875 6.28392 6.35025 6.53465 6.57788 6.71595 6.94006 7.18192 7.36036 7.72661 7.88142 8.01674 8.08937 8.61545 8.96432 9.48678 10.98207 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044911 B = 0.017132 C = 0.016185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.310095 B = 1634.014231 C = 1729.538938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.037 3.963 3 H 0.072 0.928 4 C 0.069 3.931 5 N -0.697 5.697 6 C 0.066 3.934 7 C 0.150 3.850 8 H 0.006 0.994 9 C -0.501 4.501 10 H 0.081 0.919 11 C 0.074 3.926 12 N -0.894 5.894 13 Si 0.872 3.128 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.268 1.268 17 N -0.524 5.524 18 C 0.039 3.961 19 H 0.055 0.945 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.327 0.673 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.265 0.735 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 6.877 7.424 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.074 4.074 3 H 0.090 0.910 4 C -0.061 4.061 5 N -0.325 5.325 6 C -0.064 4.064 7 C 0.041 3.959 8 H 0.024 0.976 9 C -0.541 4.541 10 H 0.099 0.901 11 C -0.129 4.129 12 N -0.532 5.532 13 Si 0.700 3.300 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.193 1.193 17 N -0.249 5.249 18 C -0.109 4.109 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.323 6.468 7.718 10.334 hybrid contribution -2.559 0.195 -0.667 2.651 sum -4.882 6.663 7.051 10.860 Atomic orbital electron populations 1.22467 0.98855 1.01932 1.01425 1.22462 0.92282 0.98719 0.93987 0.90964 1.21993 1.00888 0.88420 0.94815 1.60909 1.15669 1.13846 1.42109 1.22410 1.00901 0.96772 0.86271 1.20426 0.93411 0.85396 0.96628 0.97628 1.20834 1.04389 1.20245 1.08587 0.90083 1.25006 0.97741 0.95456 0.94698 1.69887 1.36783 1.24164 1.22338 0.86947 0.86032 0.77634 0.79420 1.20467 1.21254 1.19279 1.62423 1.58886 1.03301 1.00247 1.22165 0.97289 0.96735 0.94698 0.92602 0.92863 0.92604 0.90585 0.91660 0.85595 0.90737 0.91497 0.92525 0.93824 0.97054 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 8.21 37.16 0.31 -2.74 16 2 C 0.04 0.63 2.97 -67.66 -0.20 0.43 16 3 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 4 C 0.07 1.14 6.21 -3.76 -0.02 1.12 16 5 N -0.70 -12.85 6.83 -113.64 -0.78 -13.63 16 6 C 0.07 1.43 5.99 -3.77 -0.02 1.41 16 7 C 0.15 3.49 1.25 -68.81 -0.09 3.41 16 8 H 0.01 0.15 3.44 -51.93 -0.18 -0.03 16 9 C -0.50 -13.77 7.50 -34.44 -0.26 -14.03 16 10 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 13 Si 0.87 21.28 27.02 -169.99 -4.59 16.69 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.27 -6.26 6.78 56.52 0.38 -5.88 16 17 N -0.52 -11.04 4.72 -228.15 -1.08 -12.12 16 18 C 0.04 0.79 8.83 60.07 0.53 1.32 16 19 H 0.06 1.00 5.10 -51.93 -0.26 0.73 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.33 5.80 7.27 -39.30 -0.29 5.51 16 25 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.01 0.22 6.59 -51.93 -0.34 -0.12 16 30 H 0.08 1.86 7.00 -51.93 -0.36 1.50 16 LS Contribution 229.26 15.07 3.45 3.45 Total: -1.00 -28.78 229.26 -6.38 -35.16 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.31 Total: 3.55 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 0.15 Total: -7.11 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.08 Total: -51.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.78 -6.38 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.087 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds