Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.49143 * 2 1 4 4 C 1.53048 * 109.50859 * 120.05382 * 2 1 3 5 5 N 1.46965 * 109.36126 * 61.57862 * 4 2 1 6 6 C 1.46951 * 110.87967 * 59.32121 * 5 4 2 7 7 C 1.53048 * 109.36603 * 300.67597 * 6 5 4 8 8 H 1.09002 * 109.48914 * 298.43817 * 7 6 5 9 9 C 1.50695 * 109.49420 * 178.37081 * 7 6 5 10 10 H 1.07999 * 120.00188 * 275.35881 * 9 7 6 11 11 C 1.37883 * 119.99918 * 95.35143 * 9 7 6 12 12 N 1.31517 * 119.99904 * 185.84537 * 11 9 7 13 13 Si 1.86796 * 119.99798 * 5.84889 * 11 9 7 14 14 H 1.48495 * 109.47194 * 84.77039 * 13 11 9 15 15 H 1.48506 * 109.46657 * 204.76812 * 13 11 9 16 16 H 1.48499 * 109.47239 * 324.76386 * 13 11 9 17 17 N 1.46956 * 109.48756 * 239.95715 * 2 1 3 18 18 C 1.46902 * 110.99924 * 63.20005 * 17 2 1 19 19 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46610 * 300.03909 * 1 2 3 21 21 H 1.08993 * 109.47086 * 60.03883 * 1 2 3 22 22 H 1.08996 * 109.49014 * 181.53904 * 4 2 1 23 23 H 1.08994 * 109.49270 * 301.61362 * 4 2 1 24 24 H 1.00891 * 110.99734 * 295.44881 * 5 4 2 25 25 H 1.08997 * 109.49569 * 60.64560 * 6 5 4 26 26 H 1.09001 * 109.48961 * 180.69061 * 6 5 4 27 27 H 0.96995 * 119.99943 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47095 * 56.04400 * 18 17 2 29 29 H 1.09002 * 109.47181 * 296.04731 * 18 17 2 30 30 H 1.08994 * 109.47219 * 176.04675 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0411 -0.7225 1.2487 5 7 1.5818 -2.1183 1.2262 6 6 2.0721 -2.8118 0.0270 7 6 1.5610 -2.0894 -1.2217 8 1 0.4713 -2.1134 -1.2353 9 6 2.0949 -2.7746 -2.4531 10 1 3.0756 -2.5228 -2.8288 11 6 1.3313 -3.7231 -3.1000 12 7 1.8397 -4.4032 -4.1043 13 14 -0.4251 -4.0419 -2.5500 14 1 -1.3332 -3.0649 -3.2025 15 1 -0.8218 -5.4202 -2.9350 16 1 -0.5165 -3.8943 -1.0751 17 7 2.0203 -0.6936 -1.1992 18 6 1.6129 0.0144 -2.4203 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5145 0.8897 21 1 -0.3633 0.5132 -0.8903 22 1 3.1307 -0.6985 1.2623 23 1 1.6549 -0.2269 2.1393 24 1 0.5760 -2.1690 1.2875 25 1 3.1620 -2.8115 0.0267 26 1 1.7088 -3.8395 0.0271 27 1 1.3024 -5.0702 -4.5596 28 1 1.9632 1.0456 -2.3764 29 1 0.5260 0.0031 -2.5014 30 1 2.0472 -0.4802 -3.2890 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218602714.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -14.217699 kcal Electronic energy + Delta-G solvation = -12171.168774 eV Core-core repulsion = 10193.314560 eV Total energy + Delta-G solvation = -1977.854213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.61411 -35.30410 -34.90112 -32.79400 -29.42557 -27.41900 -26.80677 -23.98878 -22.99009 -19.90538 -19.15074 -17.15150 -16.60184 -16.08660 -15.63922 -15.25142 -15.07207 -14.74537 -14.36034 -13.32231 -13.08438 -12.97350 -12.87770 -12.81766 -12.47807 -12.16545 -11.98536 -11.84195 -11.45406 -11.32530 -10.79795 -9.37345 -8.87682 -8.32697 -6.34336 1.26555 1.28477 1.38156 2.27495 2.96446 3.27067 3.49232 4.08381 4.14961 4.33157 4.37123 4.51616 4.62197 4.69050 4.77396 4.85153 4.88532 4.94580 5.05889 5.19594 5.25848 5.37857 5.55334 6.01804 6.12271 6.35489 6.52440 6.68163 6.77498 7.30366 8.84336 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044911 B = 0.017132 C = 0.016185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.310095 B = 1634.014231 C = 1729.538938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.034 3.966 3 H 0.096 0.904 4 C 0.069 3.931 5 N -0.690 5.690 6 C 0.074 3.926 7 C 0.157 3.843 8 H 0.005 0.995 9 C -0.500 4.500 10 H 0.033 0.967 11 C 0.018 3.982 12 N -0.943 5.943 13 Si 0.936 3.064 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.248 1.248 17 N -0.543 5.543 18 C 0.045 3.955 19 H 0.037 0.963 20 H 0.087 0.913 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.336 0.664 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.266 0.734 28 H 0.075 0.925 29 H 0.013 0.987 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 8.323 9.631 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.076 4.076 3 H 0.114 0.886 4 C -0.061 4.061 5 N -0.319 5.319 6 C -0.056 4.056 7 C 0.048 3.952 8 H 0.023 0.977 9 C -0.539 4.539 10 H 0.051 0.949 11 C -0.180 4.180 12 N -0.583 5.583 13 Si 0.760 3.240 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.172 1.172 17 N -0.267 5.267 18 C -0.103 4.103 19 H 0.056 0.944 20 H 0.105 0.895 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.973 7.942 9.954 13.339 hybrid contribution -1.936 -0.162 -1.350 2.366 sum -5.909 7.780 8.604 13.018 Atomic orbital electron populations 1.22412 0.97541 1.01204 1.03003 1.22624 0.93361 0.99445 0.92170 0.88641 1.22138 1.00730 0.87235 0.96006 1.60855 1.16306 1.15143 1.39559 1.22103 0.99843 0.96548 0.87101 1.20240 0.92998 0.86808 0.95156 0.97730 1.20986 1.02488 1.20380 1.10075 0.94883 1.25804 1.02162 0.95273 0.94774 1.70037 1.38683 1.25410 1.24206 0.85911 0.80430 0.77526 0.80095 1.19871 1.21001 1.17152 1.62299 1.59769 1.02561 1.02103 1.22086 0.97145 0.97867 0.93245 0.94384 0.89460 0.92922 0.91298 0.87774 0.84612 0.92391 0.92537 0.92446 0.90664 0.96876 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.14 8.21 71.98 0.59 -4.55 16 2 C 0.03 1.05 2.97 44.92 0.13 1.18 16 3 H 0.10 2.56 8.13 -2.39 -0.02 2.55 16 4 C 0.07 1.99 6.21 86.31 0.54 2.53 16 5 N -0.69 -23.41 6.83 -513.45 -3.51 -26.92 16 6 C 0.07 3.16 5.99 86.31 0.52 3.68 16 7 C 0.16 7.24 1.25 44.17 0.06 7.29 16 8 H 0.01 0.24 3.44 -2.39 -0.01 0.23 16 9 C -0.50 -28.33 7.50 25.60 0.19 -28.13 16 10 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 11 C 0.02 1.03 5.47 84.66 0.46 1.50 16 12 N -0.94 -58.46 13.96 21.45 0.30 -58.16 16 13 Si 0.94 43.84 27.02 68.60 1.85 45.70 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 16 H -0.25 -10.71 6.78 99.48 0.67 -10.04 16 17 N -0.54 -22.13 4.72 -875.73 -4.14 -26.26 16 18 C 0.04 1.77 8.83 127.69 1.13 2.89 16 19 H 0.04 1.21 5.10 -2.39 -0.01 1.19 16 20 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 21 H 0.05 1.52 6.56 -2.39 -0.02 1.50 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.34 10.66 7.27 -89.70 -0.65 10.00 16 25 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 29 H 0.01 0.50 6.59 -2.39 -0.02 0.48 16 30 H 0.05 2.15 7.00 -2.39 -0.02 2.13 16 Total: -1.00 -63.44 229.26 -1.44 -64.89 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.44 Total: 14.37 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 3.61 Total: -13.61 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -7.35 Total: -111.34 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.85 Total: 45.70 kcal Total: -63.44 -1.44 -64.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602714.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.667 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds