Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50348 * 2 1 4 4 C 1.53046 * 109.49394 * 120.05777 * 2 1 3 5 5 N 1.46954 * 109.36409 * 178.37039 * 4 2 1 6 6 C 1.46961 * 110.88020 * 300.67915 * 5 4 2 7 7 C 1.53049 * 109.36290 * 59.32445 * 6 5 4 8 8 H 1.09002 * 109.49167 * 61.56348 * 7 6 5 9 9 C 1.50700 * 109.50521 * 181.62177 * 7 6 5 10 10 H 1.07994 * 120.00189 * 119.94208 * 9 7 6 11 11 C 1.37876 * 119.99862 * 299.94100 * 9 7 6 12 12 N 1.31515 * 120.00030 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00267 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46852 * 59.99953 * 13 11 9 15 15 H 1.48497 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46877 * 300.00099 * 13 11 9 17 17 N 1.46954 * 109.36229 * 301.59617 * 7 6 5 18 18 C 1.46905 * 110.99924 * 183.18959 * 17 7 6 19 19 H 1.09004 * 109.46570 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47013 * 300.04449 * 1 2 3 21 21 H 1.08995 * 109.47643 * 60.05226 * 1 2 3 22 22 H 1.08994 * 109.48836 * 298.33813 * 4 2 1 23 23 H 1.09002 * 109.48813 * 58.40413 * 4 2 1 24 24 H 1.00902 * 110.99908 * 176.81700 * 5 4 2 25 25 H 1.09001 * 109.48677 * 299.35284 * 6 5 4 26 26 H 1.09002 * 109.48318 * 179.28944 * 6 5 4 27 27 H 0.97003 * 120.00419 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.46962 * 59.99804 * 18 17 7 29 29 H 1.08997 * 109.46897 * 180.02562 * 18 17 7 30 30 H 1.08997 * 109.46965 * 299.99886 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7226 1.2487 5 7 3.5097 -0.7552 1.2262 6 6 4.0000 -1.4489 0.0270 7 6 3.4893 -0.7262 -1.2217 8 1 3.8755 0.2930 -1.2355 9 6 3.9572 -1.4579 -2.4533 10 1 3.2359 -1.8582 -3.1502 11 6 5.3062 -1.6163 -2.6902 12 7 6.1846 -1.1292 -1.8412 13 14 5.8863 -2.5226 -4.2171 14 1 5.3893 -1.8210 -5.4279 15 1 7.3707 -2.5568 -4.2385 16 1 5.3599 -3.9110 -4.1985 17 7 2.0203 -0.6936 -1.1992 18 6 1.4887 -0.0736 -2.4203 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5145 0.8896 21 1 -0.3634 0.5130 -0.8904 22 1 1.7023 -0.1931 2.1392 23 1 1.6546 -1.7419 1.2625 24 1 3.8748 -1.1811 2.0649 25 1 3.6361 -2.4764 0.0270 26 1 5.0900 -1.4488 0.0271 27 1 7.1337 -1.2403 -2.0080 28 1 1.8124 -0.6466 -3.2893 29 1 0.3997 -0.0620 -2.3774 30 1 1.8598 0.9481 -2.5001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218602885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = 9.101943 kcal Electronic energy + Delta-G solvation = -11950.541506 eV Core-core repulsion = 9973.698508 eV Total energy + Delta-G solvation = -1976.842998 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.29800 -33.56063 -33.30612 -30.88636 -27.19797 -25.77277 -25.02465 -21.86514 -20.78944 -18.56136 -16.40516 -15.38517 -14.97121 -14.14515 -14.05374 -13.41583 -13.20968 -12.66756 -12.26160 -11.74515 -11.60570 -11.17367 -10.97156 -10.88703 -10.68523 -10.41797 -10.08208 -9.99204 -9.44794 -8.91137 -8.46686 -7.56821 -7.09517 -6.02109 -4.07203 3.32045 3.36405 3.39215 4.39828 5.01637 5.08812 5.31716 5.53875 5.79968 5.89092 6.04180 6.12815 6.21318 6.35133 6.44339 6.48399 6.72038 6.79458 6.86658 7.01535 7.41288 7.63809 7.78399 7.93335 8.15943 8.23869 8.39083 8.65606 9.00796 9.57916 11.04623 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054566 B = 0.014104 C = 0.011814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.018006 B = 1984.806014 C = 2369.478129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.079 3.921 3 H 0.035 0.965 4 C 0.069 3.931 5 N -0.699 5.699 6 C 0.067 3.933 7 C 0.222 3.778 8 H 0.006 0.994 9 C -0.508 4.508 10 H 0.064 0.936 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 N -0.538 5.538 18 C 0.036 3.964 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.027 0.973 24 H 0.325 0.675 25 H 0.012 0.988 26 H 0.106 0.894 27 H 0.262 0.738 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 0.735 3.183 7.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 H 0.053 0.947 4 C -0.061 4.061 5 N -0.329 5.329 6 C -0.062 4.062 7 C 0.116 3.884 8 H 0.024 0.976 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.264 5.264 18 C -0.112 4.112 19 H 0.077 0.923 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.045 0.955 24 H 0.140 0.860 25 H 0.030 0.970 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -6.749 0.891 2.944 7.417 hybrid contribution 0.502 -0.576 -0.572 0.955 sum -6.247 0.315 2.371 6.689 Atomic orbital electron populations 1.21862 0.95597 1.01818 1.00793 1.21564 0.93763 0.95891 0.91814 0.94737 1.21892 0.89470 0.98213 0.96524 1.60714 1.06963 1.59269 1.05906 1.22313 1.02398 0.93635 0.87837 1.19237 0.80408 0.95422 0.93373 0.97597 1.21123 0.91519 1.35792 1.06270 0.91790 1.24970 0.96719 0.95666 0.96824 1.69877 1.01588 1.45632 1.35878 0.86559 0.77385 0.80279 0.83180 1.20285 1.21304 1.20237 1.62255 1.12582 1.51446 1.00095 1.22232 0.97636 0.96775 0.94556 0.92340 0.93146 0.92645 0.92222 0.95498 0.85951 0.96980 0.87576 0.92798 0.90797 0.93455 0.97128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.87 37.16 0.33 -1.89 16 2 C 0.08 1.56 2.56 -67.66 -0.17 1.39 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 1.31 6.00 -3.77 -0.02 1.28 16 5 N -0.70 -14.83 6.90 -113.64 -0.78 -15.62 16 6 C 0.07 1.67 5.76 -3.77 -0.02 1.65 16 7 C 0.22 5.86 1.95 -68.81 -0.13 5.73 16 8 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 9 C -0.51 -14.14 7.93 -34.44 -0.27 -14.41 16 10 H 0.06 1.77 6.45 -52.49 -0.34 1.43 16 11 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 12 N -0.89 -25.52 11.34 55.43 0.63 -24.90 16 13 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 N -0.54 -12.28 4.59 -228.14 -1.05 -13.33 16 18 C 0.04 0.75 8.90 60.07 0.53 1.29 16 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.82 6.27 -51.93 -0.33 0.50 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.32 6.00 8.90 -39.29 -0.35 5.65 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.11 2.90 6.12 -51.93 -0.32 2.58 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.07 1.60 6.28 -51.93 -0.33 1.27 16 29 H 0.05 0.83 6.04 -51.93 -0.31 0.51 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 234.48 15.07 3.53 3.53 Total: -1.00 -29.07 234.48 -7.03 -36.11 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.49 Total: 1.27 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 0.15 Total: -3.41 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.20 Total: -53.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.07 -7.03 -36.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.208 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds