Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50348 * 2 1 4 4 C 1.53046 * 109.49394 * 120.05777 * 2 1 3 5 5 N 1.46954 * 109.36409 * 178.37039 * 4 2 1 6 6 C 1.46961 * 110.88020 * 300.67915 * 5 4 2 7 7 C 1.53049 * 109.36290 * 59.32445 * 6 5 4 8 8 H 1.09002 * 109.49167 * 61.56348 * 7 6 5 9 9 C 1.50700 * 109.50521 * 181.62177 * 7 6 5 10 10 H 1.07994 * 120.00189 * 119.94208 * 9 7 6 11 11 C 1.37876 * 119.99862 * 299.94100 * 9 7 6 12 12 N 1.31515 * 120.00030 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 120.00267 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46852 * 59.99953 * 13 11 9 15 15 H 1.48497 * 109.47232 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46877 * 300.00099 * 13 11 9 17 17 N 1.46954 * 109.36229 * 301.59617 * 7 6 5 18 18 C 1.46905 * 110.99924 * 183.18959 * 17 7 6 19 19 H 1.09004 * 109.46570 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47013 * 300.04449 * 1 2 3 21 21 H 1.08995 * 109.47643 * 60.05226 * 1 2 3 22 22 H 1.08994 * 109.48836 * 298.33813 * 4 2 1 23 23 H 1.09002 * 109.48813 * 58.40413 * 4 2 1 24 24 H 1.00902 * 110.99908 * 176.81700 * 5 4 2 25 25 H 1.09001 * 109.48677 * 299.35284 * 6 5 4 26 26 H 1.09002 * 109.48318 * 179.28944 * 6 5 4 27 27 H 0.97003 * 120.00419 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.46962 * 59.99804 * 18 17 7 29 29 H 1.08997 * 109.46897 * 180.02562 * 18 17 7 30 30 H 1.08997 * 109.46965 * 299.99886 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0407 -0.7226 1.2487 5 7 3.5097 -0.7552 1.2262 6 6 4.0000 -1.4489 0.0270 7 6 3.4893 -0.7262 -1.2217 8 1 3.8755 0.2930 -1.2355 9 6 3.9572 -1.4579 -2.4533 10 1 3.2359 -1.8582 -3.1502 11 6 5.3062 -1.6163 -2.6902 12 7 6.1846 -1.1292 -1.8412 13 14 5.8863 -2.5226 -4.2171 14 1 5.3893 -1.8210 -5.4279 15 1 7.3707 -2.5568 -4.2385 16 1 5.3599 -3.9110 -4.1985 17 7 2.0203 -0.6936 -1.1992 18 6 1.4887 -0.0736 -2.4203 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5145 0.8896 21 1 -0.3634 0.5130 -0.8904 22 1 1.7023 -0.1931 2.1392 23 1 1.6546 -1.7419 1.2625 24 1 3.8748 -1.1811 2.0649 25 1 3.6361 -2.4764 0.0270 26 1 5.0900 -1.4488 0.0271 27 1 7.1337 -1.2403 -2.0080 28 1 1.8124 -0.6466 -3.2893 29 1 0.3997 -0.0620 -2.3774 30 1 1.8598 0.9481 -2.5001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218602885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = -13.496570 kcal Electronic energy + Delta-G solvation = -11951.521451 eV Core-core repulsion = 9973.698508 eV Total energy + Delta-G solvation = -1977.822943 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.04138 -35.29222 -35.28379 -32.68396 -29.02044 -27.31048 -27.01917 -23.65002 -22.58117 -20.31847 -18.46907 -17.27237 -16.69682 -15.92299 -15.70633 -15.30326 -14.98732 -14.41122 -13.92128 -13.46949 -13.04182 -12.93846 -12.79949 -12.55479 -12.50544 -12.04070 -11.96164 -11.88078 -11.20999 -10.90498 -10.56741 -9.31203 -8.95279 -8.13796 -6.27456 1.42003 1.44057 1.51954 2.40679 3.11275 3.34035 3.54027 4.05960 4.31451 4.38421 4.53656 4.64618 4.72237 4.79628 4.81681 4.98865 5.03040 5.09144 5.17682 5.32299 5.46516 5.63700 5.68911 6.05144 6.25557 6.35173 6.67222 6.76658 6.88292 7.42261 8.92099 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054566 B = 0.014104 C = 0.011814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.018006 B = 1984.806014 C = 2369.478129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 H 0.016 0.984 4 C 0.068 3.932 5 N -0.705 5.705 6 C 0.082 3.918 7 C 0.227 3.773 8 H -0.042 1.042 9 C -0.528 4.528 10 H 0.061 0.939 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.270 1.270 17 N -0.546 5.546 18 C 0.039 3.961 19 H 0.061 0.939 20 H 0.080 0.920 21 H 0.062 0.938 22 H 0.097 0.903 23 H 0.030 0.970 24 H 0.341 0.659 25 H 0.000 1.000 26 H 0.078 0.922 27 H 0.263 0.737 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 0.391 3.377 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.038 4.038 3 H 0.034 0.966 4 C -0.061 4.061 5 N -0.336 5.336 6 C -0.048 4.048 7 C 0.120 3.880 8 H -0.025 1.025 9 C -0.567 4.567 10 H 0.080 0.920 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.790 3.210 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.195 1.195 17 N -0.272 5.272 18 C -0.109 4.109 19 H 0.080 0.920 20 H 0.099 0.901 21 H 0.081 0.919 22 H 0.115 0.885 23 H 0.048 0.952 24 H 0.159 0.841 25 H 0.018 0.982 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -8.223 0.551 3.155 8.824 hybrid contribution 0.920 -0.416 -0.579 1.164 sum -7.303 0.135 2.576 7.745 Atomic orbital electron populations 1.21786 0.91803 1.02638 1.02714 1.21804 0.96743 0.94515 0.90770 0.96609 1.22043 0.87549 0.98819 0.97702 1.60607 1.09015 1.58769 1.05249 1.21901 1.00642 0.93027 0.89228 1.19005 0.82810 0.92530 0.93684 1.02473 1.21398 0.91994 1.36197 1.07092 0.92045 1.25790 0.96762 0.96323 0.99797 1.70020 1.01792 1.46442 1.37461 0.85513 0.76949 0.79115 0.79469 1.19593 1.20781 1.19550 1.62257 1.10182 1.52598 1.02114 1.22249 0.99746 0.95624 0.93302 0.91956 0.90130 0.91936 0.88532 0.95219 0.84124 0.98192 0.90428 0.92740 0.92342 0.89699 0.98109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.87 71.98 0.64 -2.98 16 2 C 0.07 2.67 2.56 44.92 0.12 2.78 16 3 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 4 C 0.07 2.43 6.00 86.31 0.52 2.95 16 5 N -0.71 -29.56 6.90 -513.44 -3.54 -33.11 16 6 C 0.08 4.17 5.76 86.31 0.50 4.67 16 7 C 0.23 12.30 1.95 44.18 0.09 12.38 16 8 H -0.04 -2.63 8.14 -2.39 -0.02 -2.65 16 9 C -0.53 -29.98 7.93 25.60 0.20 -29.78 16 10 H 0.06 3.44 6.45 -2.91 -0.02 3.42 16 11 C 0.01 0.70 5.30 84.65 0.45 1.15 16 12 N -0.92 -53.85 11.34 21.45 0.24 -53.61 16 13 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 N -0.55 -24.74 4.59 -875.71 -4.02 -28.76 16 18 C 0.04 1.58 8.90 127.69 1.14 2.72 16 19 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.06 1.63 6.27 -2.39 -0.01 1.61 16 22 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.34 12.26 8.90 -89.69 -0.80 11.47 16 25 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 26 H 0.08 4.39 6.12 -2.39 -0.01 4.38 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.06 2.53 6.28 -2.39 -0.01 2.51 16 29 H 0.08 2.78 6.04 -2.39 -0.01 2.76 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -63.50 234.48 -1.33 -64.83 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.32 Total: 10.67 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.64 Total: -6.11 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -7.32 Total: -115.48 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.50 -1.33 -64.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218602885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.338 kcal (2) G-P(sol) polarization free energy of solvation -63.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds