Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48066 * 111.00183 * 2 1 4 4 C 1.53695 * 112.47281 * 192.20349 * 3 2 1 5 5 C 1.50808 * 112.09689 * 318.54996 * 4 3 2 6 6 N 1.47912 * 108.49872 * 92.55270 * 5 4 3 7 7 C 1.40018 * 114.06308 * 280.07402 * 6 5 4 8 8 H 1.08996 * 108.96219 * 301.22708 * 7 6 5 9 9 C 1.50704 * 108.95565 * 182.47694 * 7 6 5 10 10 H 1.08001 * 119.99718 * 240.00560 * 9 7 6 11 11 C 1.37872 * 120.00072 * 60.00406 * 9 7 6 12 12 N 1.31522 * 119.99627 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00125 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47369 * 59.99733 * 13 11 9 15 15 H 1.48506 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46730 * 299.99693 * 13 11 9 17 17 C 1.44573 * 110.99941 * 232.31306 * 2 1 3 18 18 H 1.08996 * 109.47400 * 187.69133 * 1 2 3 19 19 H 1.09000 * 109.46497 * 307.69130 * 1 2 3 20 20 H 1.09003 * 109.47198 * 67.68692 * 1 2 3 21 21 H 1.09004 * 108.87744 * 312.96899 * 3 2 1 22 22 H 1.08993 * 108.88100 * 71.42635 * 3 2 1 23 23 H 1.08993 * 108.95972 * 79.21953 * 4 3 2 24 24 H 1.08993 * 108.95940 * 197.87986 * 4 3 2 25 25 H 1.08999 * 109.63373 * 332.84979 * 5 4 3 26 26 H 1.09000 * 109.63047 * 212.25333 * 5 4 3 27 27 H 1.00901 * 110.99854 * 153.79205 * 6 5 4 28 28 H 0.97005 * 119.99605 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.57717 * 100.53757 * 17 2 1 30 30 H 1.08998 * 109.57399 * 340.15584 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 3.5062 1.4333 -0.3002 5 6 4.2632 0.3382 0.4084 6 7 4.3612 -0.8267 -0.4977 7 6 3.2039 -1.6136 -0.5431 8 1 2.9828 -1.9766 0.4605 9 6 3.4497 -2.7939 -1.4473 10 1 2.8359 -2.9396 -2.3239 11 6 4.4581 -3.6877 -1.1554 12 7 5.2058 -3.5099 -0.0882 13 14 4.7632 -5.1504 -2.2765 14 1 5.0956 -4.6675 -3.6408 15 1 5.8941 -5.9534 -1.7458 16 1 3.5420 -5.9934 -2.3336 17 6 1.9871 -0.8251 -1.0681 18 1 -0.3634 -1.0184 0.1375 19 1 -0.3632 0.6283 0.8132 20 1 -0.3634 0.3902 -0.9507 21 1 1.4698 1.9635 -0.7547 22 1 1.8194 1.8293 0.9776 23 1 3.6568 1.3296 -1.3747 24 1 3.8984 2.3987 0.0192 25 1 3.7307 0.0528 1.3156 26 1 5.2632 0.6897 0.6625 27 1 5.1713 -1.3873 -0.2795 28 1 5.9155 -4.1386 0.1170 29 1 2.2933 -0.1935 -1.9019 30 1 1.2161 -1.5211 -1.3987 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218603175.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = 9.410814 kcal Electronic energy + Delta-G solvation = -11890.658962 eV Core-core repulsion = 9913.829357 eV Total energy + Delta-G solvation = -1976.829604 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.21596 -34.59141 -32.73567 -30.86858 -27.73317 -25.45494 -24.81563 -22.61978 -19.54659 -18.99382 -16.60973 -15.62120 -14.69206 -14.37010 -14.07632 -13.74530 -13.33069 -12.44554 -12.28017 -12.16145 -11.43194 -11.22426 -10.93579 -10.85833 -10.52096 -10.39426 -10.15238 -9.85155 -9.55665 -8.99655 -8.52926 -7.45261 -6.58696 -6.02975 -4.06619 3.34395 3.38512 3.41492 4.41525 4.64404 5.22313 5.48385 5.59954 5.72067 5.81018 5.90945 6.07870 6.21033 6.27125 6.38505 6.50481 6.61328 6.67696 6.80183 6.96921 7.07603 7.62067 7.78004 7.88498 8.09744 8.31149 8.86650 9.30413 9.40761 9.62224 11.06566 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056079 B = 0.012967 C = 0.011298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.178048 B = 2158.873802 C = 2477.717562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.557 5.557 3 C 0.068 3.932 4 C -0.117 4.117 5 C 0.065 3.935 6 N -0.693 5.693 7 C 0.235 3.765 8 H -0.007 1.007 9 C -0.505 4.505 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.904 5.904 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.071 3.929 18 H 0.065 0.935 19 H 0.055 0.945 20 H 0.014 0.986 21 H 0.019 0.981 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.368 0.632 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 6.724 0.198 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.282 5.282 3 C -0.059 4.059 4 C -0.155 4.155 5 C -0.064 4.064 6 N -0.332 5.332 7 C 0.124 3.876 8 H 0.011 0.989 9 C -0.545 4.545 10 H 0.075 0.925 11 C -0.137 4.137 12 N -0.544 5.544 13 Si 0.727 3.273 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.057 4.057 18 H 0.083 0.917 19 H 0.074 0.926 20 H 0.033 0.967 21 H 0.037 0.963 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.195 0.805 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.282 6.772 0.182 8.014 hybrid contribution -0.055 -0.822 -0.468 0.947 sum -4.337 5.950 -0.286 7.368 Atomic orbital electron populations 1.22309 0.88582 1.01661 0.98891 1.60839 1.05993 1.11838 1.49540 1.22311 0.95634 0.88736 0.99248 1.21495 0.93543 0.98343 1.02129 1.21433 0.97133 0.93190 0.94678 1.58211 1.09414 1.12953 1.52591 1.17834 0.85921 0.88823 0.95005 0.98938 1.21270 1.16027 1.07137 1.10052 0.92524 1.24988 0.95812 0.97840 0.95076 1.69629 1.20995 1.37846 1.25977 0.86555 0.77623 0.82219 0.80931 1.20221 1.21351 1.20389 1.22193 0.98304 0.94424 0.90764 0.91661 0.92612 0.96729 0.96252 0.92291 0.91357 0.92762 0.95100 0.93493 0.80537 0.92594 0.94821 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.28 60.07 0.56 1.11 16 2 N -0.56 -11.06 4.19 -242.60 -1.02 -12.08 16 3 C 0.07 1.19 5.46 -2.82 -0.02 1.17 16 4 C -0.12 -2.12 5.36 -27.47 -0.15 -2.27 16 5 C 0.07 1.38 6.23 -4.37 -0.03 1.36 16 6 N -0.69 -17.41 5.84 -112.22 -0.66 -18.06 16 7 C 0.23 6.18 2.14 -71.79 -0.15 6.02 16 8 H -0.01 -0.20 8.06 -51.93 -0.42 -0.62 16 9 C -0.51 -14.19 8.62 -34.44 -0.30 -14.49 16 10 H 0.06 1.56 7.71 -52.49 -0.40 1.15 16 11 C 0.06 1.77 5.27 -17.82 -0.09 1.67 16 12 N -0.90 -25.86 11.44 55.43 0.63 -25.23 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 C 0.07 1.60 4.76 -4.44 -0.02 1.58 16 18 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 19 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 20 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.02 0.31 8.03 -51.93 -0.42 -0.10 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 1.34 7.23 -51.93 -0.38 0.96 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.37 10.00 6.35 -39.29 -0.25 9.75 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.77 6.93 -51.93 -0.36 0.41 16 30 H 0.06 1.28 7.40 -51.93 -0.38 0.89 16 LS Contribution 235.81 15.07 3.55 3.55 Total: -1.00 -28.75 235.81 -7.37 -36.12 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.67 Total: 3.07 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.20 Total: -3.83 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -1.04 Total: -55.37 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.75 -7.37 -36.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218603175.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.530 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds