Wall clock time and date at job start Mon Mar 30 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48066 * 111.00183 * 2 1 4 4 C 1.53695 * 112.47281 * 192.20349 * 3 2 1 5 5 C 1.50808 * 112.09689 * 318.54996 * 4 3 2 6 6 N 1.47912 * 108.49872 * 92.55270 * 5 4 3 7 7 C 1.40018 * 114.06308 * 280.07402 * 6 5 4 8 8 H 1.08996 * 108.96219 * 301.22708 * 7 6 5 9 9 C 1.50704 * 108.95565 * 182.47694 * 7 6 5 10 10 H 1.08001 * 119.99718 * 240.00560 * 9 7 6 11 11 C 1.37872 * 120.00072 * 60.00406 * 9 7 6 12 12 N 1.31522 * 119.99627 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00125 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47369 * 59.99733 * 13 11 9 15 15 H 1.48506 * 109.47053 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46730 * 299.99693 * 13 11 9 17 17 C 1.44573 * 110.99941 * 232.31306 * 2 1 3 18 18 H 1.08996 * 109.47400 * 187.69133 * 1 2 3 19 19 H 1.09000 * 109.46497 * 307.69130 * 1 2 3 20 20 H 1.09003 * 109.47198 * 67.68692 * 1 2 3 21 21 H 1.09004 * 108.87744 * 312.96899 * 3 2 1 22 22 H 1.08993 * 108.88100 * 71.42635 * 3 2 1 23 23 H 1.08993 * 108.95972 * 79.21953 * 4 3 2 24 24 H 1.08993 * 108.95940 * 197.87986 * 4 3 2 25 25 H 1.08999 * 109.63373 * 332.84979 * 5 4 3 26 26 H 1.09000 * 109.63047 * 212.25333 * 5 4 3 27 27 H 1.00901 * 110.99854 * 153.79205 * 6 5 4 28 28 H 0.97005 * 119.99605 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.57717 * 100.53757 * 17 2 1 30 30 H 1.08998 * 109.57399 * 340.15584 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9997 1.3823 0.0000 4 6 3.5062 1.4333 -0.3002 5 6 4.2632 0.3382 0.4084 6 7 4.3612 -0.8267 -0.4977 7 6 3.2039 -1.6136 -0.5431 8 1 2.9828 -1.9766 0.4605 9 6 3.4497 -2.7939 -1.4473 10 1 2.8359 -2.9396 -2.3239 11 6 4.4581 -3.6877 -1.1554 12 7 5.2058 -3.5099 -0.0882 13 14 4.7632 -5.1504 -2.2765 14 1 5.0956 -4.6675 -3.6408 15 1 5.8941 -5.9534 -1.7458 16 1 3.5420 -5.9934 -2.3336 17 6 1.9871 -0.8251 -1.0681 18 1 -0.3634 -1.0184 0.1375 19 1 -0.3632 0.6283 0.8132 20 1 -0.3634 0.3902 -0.9507 21 1 1.4698 1.9635 -0.7547 22 1 1.8194 1.8293 0.9776 23 1 3.6568 1.3296 -1.3747 24 1 3.8984 2.3987 0.0192 25 1 3.7307 0.0528 1.3156 26 1 5.2632 0.6897 0.6625 27 1 5.1713 -1.3873 -0.2795 28 1 5.9155 -4.1386 0.1170 29 1 2.2933 -0.1935 -1.9019 30 1 1.2161 -1.5211 -1.3987 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218603175.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:39 Heat of formation + Delta-G solvation = -11.619111 kcal Electronic energy + Delta-G solvation = -11891.570888 eV Core-core repulsion = 9913.829357 eV Total energy + Delta-G solvation = -1977.741530 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.89557 -36.37464 -34.56443 -32.74436 -29.41076 -27.32449 -26.41878 -24.34590 -21.38372 -20.60498 -18.65723 -17.39364 -16.55720 -16.03210 -15.63169 -15.52617 -15.04104 -14.17990 -13.87368 -13.70141 -13.24837 -12.99511 -12.78443 -12.43366 -12.34067 -11.97251 -11.77457 -11.63783 -11.36859 -10.98450 -10.63567 -8.97595 -8.60877 -8.14491 -6.27569 1.43488 1.45742 1.53403 2.43296 3.10820 3.16956 3.94373 4.16470 4.25895 4.39072 4.47455 4.62177 4.70173 4.75452 4.88736 4.91178 4.98273 5.01398 5.08515 5.27781 5.47660 5.53305 5.82050 6.15442 6.35026 6.43686 6.72425 7.25360 7.37330 7.46503 8.93466 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056079 B = 0.012967 C = 0.011298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.178048 B = 2158.873802 C = 2477.717562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.581 5.581 3 C 0.066 3.934 4 C -0.112 4.112 5 C 0.065 3.935 6 N -0.700 5.700 7 C 0.239 3.761 8 H -0.057 1.057 9 C -0.533 4.533 10 H 0.055 0.945 11 C 0.017 3.983 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.088 3.912 18 H 0.058 0.942 19 H 0.080 0.920 20 H 0.028 0.972 21 H 0.039 0.961 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.351 0.649 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 7.664 -0.276 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.306 5.306 3 C -0.060 4.060 4 C -0.150 4.150 5 C -0.064 4.064 6 N -0.336 5.336 7 C 0.128 3.872 8 H -0.039 1.039 9 C -0.572 4.572 10 H 0.073 0.927 11 C -0.182 4.182 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.040 4.040 18 H 0.077 0.923 19 H 0.099 0.901 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.098 0.902 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.175 0.825 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.847 7.742 -0.290 9.139 hybrid contribution 0.115 -1.076 -0.255 1.112 sum -4.732 6.666 -0.544 8.193 Atomic orbital electron populations 1.22350 0.86226 1.02091 1.00590 1.60732 1.08289 1.13204 1.48377 1.22407 0.95005 0.87559 1.01062 1.21451 0.94102 0.98745 1.00699 1.21554 0.98472 0.92618 0.93742 1.58250 1.08286 1.13317 1.53781 1.17738 0.87786 0.89446 0.92198 1.03931 1.21630 1.16542 1.08615 1.10462 0.92675 1.25794 0.95419 1.00532 0.96424 1.69758 1.21208 1.38657 1.27251 0.85503 0.77631 0.78761 0.79020 1.19596 1.20810 1.19754 1.21817 0.96639 0.94401 0.91172 0.92275 0.90115 0.95383 0.94283 0.90235 0.92871 0.89015 0.96795 0.91957 0.82462 0.92500 0.95208 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 9.28 127.69 1.19 2.25 16 2 N -0.58 -22.29 4.19 -921.44 -3.86 -26.15 16 3 C 0.07 2.13 5.46 86.31 0.47 2.60 16 4 C -0.11 -3.81 5.36 30.12 0.16 -3.64 16 5 C 0.07 2.73 6.23 85.40 0.53 3.26 16 6 N -0.70 -35.75 5.84 -508.96 -2.97 -38.72 16 7 C 0.24 12.91 2.14 45.82 0.10 13.01 16 8 H -0.06 -3.52 8.06 -2.39 -0.02 -3.54 16 9 C -0.53 -30.54 8.62 25.60 0.22 -30.32 16 10 H 0.06 3.08 7.71 -2.91 -0.02 3.05 16 11 C 0.02 0.94 5.27 84.65 0.45 1.38 16 12 N -0.93 -54.12 11.44 21.45 0.25 -53.88 16 13 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C 0.09 3.99 4.76 87.15 0.42 4.41 16 18 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 19 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 20 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.04 1.12 8.03 -2.39 -0.02 1.10 16 22 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.05 1.98 7.23 -2.39 -0.02 1.97 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.35 19.62 6.35 -89.69 -0.57 19.05 16 28 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 29 H 0.03 1.34 6.93 -2.39 -0.02 1.33 16 30 H 0.05 2.40 7.40 -2.39 -0.02 2.38 16 Total: -1.00 -62.34 235.81 -0.50 -62.84 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.53 Total: 16.70 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.53 Total: -7.06 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.59 Total: -118.75 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -62.34 -0.50 -62.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218603175.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.221 kcal (2) G-P(sol) polarization free energy of solvation -62.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds