Wall clock time and date at job start Mon Mar 30 2020 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.62589 * 2 1 4 4 C 1.53237 * 109.62628 * 239.41598 * 2 1 3 5 5 N 1.46896 * 109.34367 * 186.45995 * 4 2 1 6 6 C 1.46897 * 111.00551 * 187.25519 * 5 4 2 7 7 C 1.46901 * 111.26534 * 63.10210 * 5 4 2 8 8 C 1.53693 * 109.25916 * 296.76115 * 7 5 4 9 9 N 1.47072 * 109.62902 * 120.38926 * 2 1 3 10 10 C 1.36939 * 120.87971 * 350.88999 * 9 2 1 11 11 H 1.08001 * 120.00195 * 29.11814 * 10 9 2 12 12 C 1.38809 * 120.00090 * 208.83300 * 10 9 2 13 13 N 1.31618 * 119.99991 * 15.62844 * 12 10 9 14 14 Si 1.86800 * 120.00318 * 195.63620 * 12 10 9 15 15 H 1.48495 * 109.47458 * 89.99581 * 14 12 10 16 16 H 1.48498 * 109.47242 * 210.00257 * 14 12 10 17 17 H 1.48508 * 109.46766 * 329.99763 * 14 12 10 18 18 H 1.08999 * 109.46867 * 299.61433 * 1 2 3 19 19 H 1.09007 * 109.47382 * 59.60846 * 1 2 3 20 20 H 1.08995 * 109.47637 * 179.61319 * 1 2 3 21 21 H 1.09003 * 109.49339 * 306.42513 * 4 2 1 22 22 H 1.09000 * 109.49371 * 66.50262 * 4 2 1 23 23 H 1.08997 * 109.46834 * 59.99704 * 6 5 4 24 24 H 1.09004 * 109.47281 * 180.02562 * 6 5 4 25 25 H 1.09001 * 109.47100 * 300.00041 * 6 5 4 26 26 H 1.08996 * 109.49215 * 56.86199 * 7 5 4 27 27 H 1.09007 * 109.49058 * 176.91176 * 7 5 4 28 28 H 1.09001 * 109.79674 * 294.41842 * 8 7 5 29 29 H 1.09003 * 109.70272 * 173.69006 * 8 7 5 30 30 H 0.97001 * 120.00102 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7344 -1.2426 5 7 3.5054 -0.8664 -1.1595 6 6 4.0567 -1.4103 -2.4077 7 6 3.9015 -1.6872 -0.0073 8 6 3.4638 -0.9864 1.2886 9 7 2.0241 -0.7008 1.1949 10 6 1.1672 -1.0723 2.1964 11 1 0.1358 -1.2977 1.9687 12 6 1.6256 -1.1651 3.5033 13 7 2.7721 -0.6129 3.8393 14 14 0.6154 -2.0737 4.7852 15 1 1.0139 -3.5040 4.8068 16 1 0.8555 -1.4726 6.1218 17 1 -0.8265 -1.9666 4.4462 18 1 -0.3633 0.5078 0.8934 19 1 -0.3634 0.5199 -0.8865 20 1 -0.3634 -1.0276 -0.0069 21 1 1.5922 -1.7247 -1.2932 22 1 1.7810 -0.1675 -2.1354 23 1 3.8126 -0.7427 -3.2340 24 1 5.1396 -1.4982 -2.3188 25 1 3.6270 -2.3941 -2.5964 26 1 3.4232 -2.6642 -0.0752 27 1 4.9844 -1.8117 -0.0046 28 1 4.0151 -0.0538 1.4084 29 1 3.6530 -1.6389 2.1411 30 1 3.0923 -0.6773 4.7527 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225141324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:19 Heat of formation + Delta-G solvation = 28.067926 kcal Electronic energy + Delta-G solvation = -11946.946371 eV Core-core repulsion = 9970.925800 eV Total energy + Delta-G solvation = -1976.020571 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.09435 -34.49852 -32.16450 -30.41924 -27.55368 -26.24116 -24.33957 -22.28004 -20.86822 -19.00878 -16.30997 -15.24353 -14.56163 -14.36376 -13.90426 -13.70151 -13.22888 -12.91598 -11.97870 -11.80218 -11.49853 -11.26042 -10.93854 -10.80141 -10.60359 -10.45234 -10.09859 -9.97558 -9.65589 -9.37837 -8.45118 -7.73790 -6.57021 -5.72707 -3.15476 3.39999 3.46741 3.47883 4.51338 4.60044 5.39604 5.43982 5.57873 5.73501 5.91198 6.00942 6.11428 6.17979 6.20808 6.31945 6.39017 6.40369 6.53194 6.78515 7.03020 7.10159 7.34212 7.68372 7.72558 7.78907 7.88882 8.50443 9.27046 9.90901 10.50951 11.36276 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054548 B = 0.013913 C = 0.012097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.187197 B = 2012.001851 C = 2314.064671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 H 0.032 0.968 4 C 0.049 3.951 5 N -0.541 5.541 6 C 0.026 3.974 7 C 0.033 3.967 8 C 0.179 3.821 9 N -0.591 5.591 10 C -0.249 4.249 11 H 0.070 0.930 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.901 3.099 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.279 1.279 18 H 0.063 0.937 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.027 0.973 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -1.441 -8.293 8.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.050 0.950 4 C -0.081 4.081 5 N -0.266 5.266 6 C -0.122 4.122 7 C -0.096 4.096 8 C 0.053 3.947 9 N -0.315 5.315 10 C -0.378 4.378 11 H 0.087 0.913 12 C -0.198 4.198 13 N -0.549 5.549 14 Si 0.731 3.269 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.205 1.205 18 H 0.082 0.918 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.195 -0.966 -8.046 8.107 hybrid contribution -0.701 -1.315 0.553 1.590 sum -0.506 -2.281 -7.494 7.850 Atomic orbital electron populations 1.21796 0.96021 1.01214 1.00449 1.20502 0.92392 0.94153 0.86664 0.95018 1.22654 0.87032 0.99044 0.99337 1.61932 1.11236 1.50787 1.02619 1.22342 0.99752 0.97240 0.92904 1.22993 0.98556 0.94759 0.93270 1.20934 0.83836 0.97630 0.92288 1.44205 1.03904 1.65389 1.18041 1.19200 0.93835 1.38831 0.85977 0.91282 1.25087 0.97724 0.99989 0.96956 1.70024 1.21656 1.45348 1.17896 0.86311 0.79792 0.79619 0.81182 1.21581 1.21790 1.20474 0.91754 0.94193 0.93043 0.95516 0.92239 0.92229 0.92091 0.96634 0.95809 0.92260 0.95517 0.89562 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 7.95 37.16 0.30 -2.37 16 2 C 0.17 3.75 3.65 -67.50 -0.25 3.50 16 3 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.05 0.94 4.91 -3.70 -0.02 0.93 16 5 N -0.54 -10.48 4.88 -242.31 -1.18 -11.66 16 6 C 0.03 0.40 9.58 60.06 0.58 0.98 16 7 C 0.03 0.69 5.64 -3.46 -0.02 0.67 16 8 C 0.18 4.49 5.42 -3.37 -0.02 4.47 16 9 N -0.59 -15.31 3.02 -164.21 -0.50 -15.81 16 10 C -0.25 -6.87 8.65 -15.06 -0.13 -7.00 16 11 H 0.07 1.86 6.25 -52.49 -0.33 1.53 16 12 C 0.00 0.02 4.95 -17.43 -0.09 -0.06 16 13 N -0.90 -26.65 11.21 55.49 0.62 -26.03 16 14 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H 0.06 1.34 7.55 -51.93 -0.39 0.95 16 19 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 20 H 0.05 1.01 7.58 -51.93 -0.39 0.61 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.11 8.06 -51.92 -0.42 0.69 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.36 6.23 -51.93 -0.32 2.03 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 237.93 15.07 3.59 3.59 Total: -1.00 -29.68 237.93 -6.94 -36.62 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.79 Total: -4.71 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 0.35 Total: 1.12 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -1.06 Total: -53.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.68 -6.94 -36.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225141324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.685 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds