Wall clock time and date at job start Mon Mar 30 2020 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.62589 * 2 1 4 4 C 1.53237 * 109.62628 * 239.41598 * 2 1 3 5 5 N 1.46896 * 109.34367 * 186.45995 * 4 2 1 6 6 C 1.46897 * 111.00551 * 187.25519 * 5 4 2 7 7 C 1.46901 * 111.26534 * 63.10210 * 5 4 2 8 8 C 1.53693 * 109.25916 * 296.76115 * 7 5 4 9 9 N 1.47072 * 109.62902 * 120.38926 * 2 1 3 10 10 C 1.36939 * 120.87971 * 350.88999 * 9 2 1 11 11 H 1.08001 * 120.00195 * 29.11814 * 10 9 2 12 12 C 1.38809 * 120.00090 * 208.83300 * 10 9 2 13 13 N 1.31618 * 119.99991 * 15.62844 * 12 10 9 14 14 Si 1.86800 * 120.00318 * 195.63620 * 12 10 9 15 15 H 1.48495 * 109.47458 * 89.99581 * 14 12 10 16 16 H 1.48498 * 109.47242 * 210.00257 * 14 12 10 17 17 H 1.48508 * 109.46766 * 329.99763 * 14 12 10 18 18 H 1.08999 * 109.46867 * 299.61433 * 1 2 3 19 19 H 1.09007 * 109.47382 * 59.60846 * 1 2 3 20 20 H 1.08995 * 109.47637 * 179.61319 * 1 2 3 21 21 H 1.09003 * 109.49339 * 306.42513 * 4 2 1 22 22 H 1.09000 * 109.49371 * 66.50262 * 4 2 1 23 23 H 1.08997 * 109.46834 * 59.99704 * 6 5 4 24 24 H 1.09004 * 109.47281 * 180.02562 * 6 5 4 25 25 H 1.09001 * 109.47100 * 300.00041 * 6 5 4 26 26 H 1.08996 * 109.49215 * 56.86199 * 7 5 4 27 27 H 1.09007 * 109.49058 * 176.91176 * 7 5 4 28 28 H 1.09001 * 109.79674 * 294.41842 * 8 7 5 29 29 H 1.09003 * 109.70272 * 173.69006 * 8 7 5 30 30 H 0.97001 * 120.00102 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7344 -1.2426 5 7 3.5054 -0.8664 -1.1595 6 6 4.0567 -1.4103 -2.4077 7 6 3.9015 -1.6872 -0.0073 8 6 3.4638 -0.9864 1.2886 9 7 2.0241 -0.7008 1.1949 10 6 1.1672 -1.0723 2.1964 11 1 0.1358 -1.2977 1.9687 12 6 1.6256 -1.1651 3.5033 13 7 2.7721 -0.6129 3.8393 14 14 0.6154 -2.0737 4.7852 15 1 1.0139 -3.5040 4.8068 16 1 0.8555 -1.4726 6.1218 17 1 -0.8265 -1.9666 4.4462 18 1 -0.3633 0.5078 0.8934 19 1 -0.3634 0.5199 -0.8865 20 1 -0.3634 -1.0276 -0.0069 21 1 1.5922 -1.7247 -1.2932 22 1 1.7810 -0.1675 -2.1354 23 1 3.8126 -0.7427 -3.2340 24 1 5.1396 -1.4982 -2.3188 25 1 3.6270 -2.3941 -2.5964 26 1 3.4232 -2.6642 -0.0752 27 1 4.9844 -1.8117 -0.0046 28 1 4.0151 -0.0538 1.4084 29 1 3.6530 -1.6389 2.1411 30 1 3.0923 -0.6773 4.7527 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225141324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:19 Heat of formation + Delta-G solvation = 7.541034 kcal Electronic energy + Delta-G solvation = -11947.836483 eV Core-core repulsion = 9970.925800 eV Total energy + Delta-G solvation = -1976.910684 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77740 -36.25929 -34.03323 -32.31893 -29.30957 -27.79398 -26.15545 -24.05426 -22.54387 -20.83525 -18.28273 -17.15340 -16.14679 -16.04464 -15.64083 -15.34883 -14.97909 -14.79383 -13.40372 -13.39492 -13.16144 -12.91756 -12.75326 -12.56782 -12.38095 -12.20234 -11.94929 -11.75842 -11.53194 -11.20640 -10.56416 -9.25528 -8.62531 -7.84376 -5.30549 1.46521 1.47547 1.56470 2.51717 3.10007 3.31496 3.61834 4.21493 4.28765 4.34556 4.51313 4.59141 4.67647 4.72938 4.76597 4.85829 4.88542 5.00865 5.12802 5.25491 5.40684 5.50782 5.67832 5.69320 6.19315 6.29994 6.42018 7.16329 7.87700 8.43448 9.23072 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054548 B = 0.013913 C = 0.012097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.187197 B = 2012.001851 C = 2314.064671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.015 0.985 4 C 0.058 3.942 5 N -0.557 5.557 6 C 0.028 3.972 7 C 0.049 3.951 8 C 0.184 3.816 9 N -0.610 5.610 10 C -0.254 4.254 11 H 0.075 0.925 12 C -0.055 4.055 13 N -0.940 5.940 14 Si 0.966 3.034 15 H -0.287 1.287 16 H -0.296 1.296 17 H -0.267 1.267 18 H 0.043 0.957 19 H 0.079 0.921 20 H 0.048 0.952 21 H 0.023 0.977 22 H 0.092 0.908 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.079 0.921 28 H -0.003 1.003 29 H 0.055 0.945 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -1.985 -10.050 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.032 0.968 4 C -0.071 4.071 5 N -0.282 5.282 6 C -0.120 4.120 7 C -0.081 4.081 8 C 0.058 3.942 9 N -0.334 5.334 10 C -0.384 4.384 11 H 0.093 0.907 12 C -0.250 4.250 13 N -0.586 5.586 14 Si 0.794 3.206 15 H -0.214 1.214 16 H -0.223 1.223 17 H -0.191 1.191 18 H 0.062 0.938 19 H 0.098 0.902 20 H 0.067 0.933 21 H 0.041 0.959 22 H 0.110 0.890 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.519 -1.512 -9.846 9.974 hybrid contribution -0.469 -1.084 1.030 1.567 sum -0.987 -2.596 -8.815 9.243 Atomic orbital electron populations 1.21697 0.94084 1.01325 1.01372 1.20766 0.94152 0.93277 0.86573 0.96778 1.22525 0.87035 0.98792 0.98767 1.61888 1.11404 1.51089 1.03789 1.22418 1.00406 0.97925 0.91219 1.22680 0.99605 0.93828 0.91946 1.20697 0.83746 0.95927 0.93798 1.44521 1.03958 1.66067 1.18896 1.19545 0.94329 1.37904 0.86603 0.90734 1.25862 0.98972 1.01180 0.98983 1.70190 1.23442 1.47078 1.17929 0.85283 0.78922 0.78103 0.78276 1.21360 1.22311 1.19135 0.93821 0.90242 0.93268 0.95895 0.88952 0.90026 0.90792 0.95936 0.96336 0.90225 0.98523 0.92640 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 2 C 0.16 6.83 3.65 44.96 0.16 7.00 16 3 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 4 C 0.06 2.09 4.91 86.38 0.42 2.51 16 5 N -0.56 -20.23 4.88 -920.54 -4.49 -24.73 16 6 C 0.03 0.75 9.58 127.69 1.22 1.97 16 7 C 0.05 1.98 5.64 86.54 0.49 2.47 16 8 C 0.18 9.45 5.42 86.50 0.47 9.92 16 9 N -0.61 -31.87 3.02 -673.44 -2.04 -33.90 16 10 C -0.25 -14.11 8.65 84.03 0.73 -13.38 16 11 H 0.08 3.99 6.25 -2.91 -0.02 3.97 16 12 C -0.06 -3.14 4.95 84.86 0.42 -2.72 16 13 N -0.94 -57.09 11.21 21.65 0.24 -56.85 16 14 Si 0.97 45.59 29.58 68.60 2.03 47.62 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 16 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H 0.04 1.77 7.55 -2.39 -0.02 1.76 16 19 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 20 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 21 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 23 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 24 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 25 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 2.87 8.06 -2.38 -0.02 2.85 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.06 3.15 6.23 -2.39 -0.01 3.13 16 30 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -64.28 237.93 1.32 -62.96 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.09 Total: 1.27 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.49 Total: 3.62 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -6.29 Total: -115.47 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -64.28 1.32 -62.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225141324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.505 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds