Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47845 * 110.99962 * 2 1 4 4 C 1.54906 * 104.80035 * 146.36236 * 3 2 1 5 5 C 1.55397 * 101.73848 * 323.02314 * 4 3 2 6 6 C 1.47441 * 111.00188 * 120.84090 * 2 1 3 7 7 H 1.09006 * 109.88578 * 117.17632 * 6 2 1 8 8 C 1.53005 * 109.88736 * 356.15393 * 6 2 1 9 9 N 1.46507 * 109.46643 * 176.36581 * 8 6 2 10 10 C 1.36937 * 119.99524 * 174.83754 * 9 8 6 11 11 H 1.07999 * 119.99922 * 0.02562 * 10 9 8 12 12 C 1.38808 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00103 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00084 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47310 * 270.00102 * 14 12 10 16 16 H 1.48505 * 109.47239 * 30.00158 * 14 12 10 17 17 H 1.48500 * 109.47384 * 149.99978 * 14 12 10 18 18 H 1.08995 * 109.47036 * 297.84531 * 1 2 3 19 19 H 1.08996 * 109.47192 * 57.84345 * 1 2 3 20 20 H 1.08999 * 109.46795 * 177.84901 * 1 2 3 21 21 H 1.09004 * 110.37690 * 265.19709 * 3 2 1 22 22 H 1.09001 * 110.37346 * 27.42615 * 3 2 1 23 23 H 1.08998 * 110.98701 * 81.01602 * 4 3 2 24 24 H 1.08990 * 110.99417 * 204.80253 * 4 3 2 25 25 H 1.08997 * 110.68002 * 277.17150 * 5 4 3 26 26 H 1.09008 * 110.84802 * 153.86007 * 5 4 3 27 27 H 1.08999 * 109.47156 * 56.36281 * 8 6 2 28 28 H 1.08998 * 109.46700 * 296.35930 * 8 6 2 29 29 H 0.96996 * 120.00294 * 354.83918 * 9 8 6 30 30 H 0.96998 * 120.00195 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9182 0.2790 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8675 8 6 0.8438 -1.1357 2.0902 9 7 1.3716 -1.9104 3.2161 10 6 0.5343 -2.3140 4.2218 11 1 -0.5151 -2.0614 4.1847 12 6 1.0342 -3.0485 5.2882 13 7 0.2294 -3.4368 6.2546 14 14 2.8488 -3.4870 5.3513 15 1 3.0670 -4.7903 4.6736 16 1 3.6370 -2.4332 4.6631 17 1 3.2853 -3.5862 6.7672 18 1 -0.3633 0.4800 0.9086 19 1 -0.3633 0.5469 -0.8700 20 1 -0.3633 -1.0270 -0.0386 21 1 2.2147 1.7039 -1.0182 22 1 1.2881 2.0595 0.4707 23 1 4.1302 0.9282 0.2243 24 1 3.5498 2.2722 1.2634 25 1 2.3783 0.7706 2.7421 26 1 3.8019 -0.2335 2.3133 27 1 0.1441 -1.7494 1.5230 28 1 0.3292 -0.2517 2.4670 29 1 2.3140 -2.1375 3.2492 30 1 0.5786 -3.9504 6.9997 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226047095.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = 21.652853 kcal Electronic energy + Delta-G solvation = -11561.934438 eV Core-core repulsion = 9585.635688 eV Total energy + Delta-G solvation = -1976.298749 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.19485 -34.57922 -31.98799 -31.51462 -29.00300 -25.40785 -24.90689 -22.09028 -20.97684 -19.41689 -17.48121 -16.08332 -15.37455 -14.61615 -14.05902 -13.84473 -13.43816 -12.95788 -12.61876 -12.42400 -11.80123 -11.30675 -11.13200 -11.11043 -10.91932 -10.89666 -10.50080 -10.38604 -10.09327 -9.59671 -8.89088 -8.08129 -7.22464 -5.76844 -3.12345 3.37699 3.40868 3.45389 4.16724 4.59444 4.83199 4.89463 5.13144 5.42066 5.49930 5.54029 5.63885 5.68806 5.73555 5.77856 5.90778 6.01808 6.08681 6.13204 6.27551 6.40872 6.59605 6.76906 7.20327 7.23766 7.99123 8.42059 9.21055 9.93469 10.13795 11.41605 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058732 B = 0.011129 C = 0.009882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.630940 B = 2515.305383 C = 2832.774104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.528 5.528 3 C 0.041 3.959 4 C -0.131 4.131 5 C -0.133 4.133 6 C 0.059 3.941 7 H 0.084 0.916 8 C 0.144 3.856 9 N -0.753 5.753 10 C -0.244 4.244 11 H 0.089 0.911 12 C 0.004 3.996 13 N -0.935 5.935 14 Si 0.885 3.115 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.291 1.291 18 H 0.036 0.964 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.361 0.639 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 8.733 -11.510 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.252 5.252 3 C -0.087 4.087 4 C -0.169 4.169 5 C -0.171 4.171 6 C -0.049 4.049 7 H 0.102 0.898 8 C 0.017 3.983 9 N -0.399 5.399 10 C -0.374 4.374 11 H 0.107 0.893 12 C -0.192 4.192 13 N -0.583 5.583 14 Si 0.715 3.285 15 H -0.210 1.210 16 H -0.203 1.203 17 H -0.217 1.217 18 H 0.054 0.946 19 H 0.078 0.922 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.833 8.441 -11.836 15.320 hybrid contribution 0.928 0.007 0.958 1.334 sum 5.761 8.449 -10.878 14.930 Atomic orbital electron populations 1.22581 0.87963 1.02696 1.00265 1.63754 1.08210 1.13720 1.39520 1.23049 0.95714 0.90022 0.99935 1.22750 0.97495 0.99374 0.97273 1.22862 0.99839 0.96722 0.97722 1.22652 0.96324 0.97070 0.88868 0.89844 1.21248 0.94046 0.94526 0.88527 1.42649 1.07883 1.65637 1.23700 1.19048 0.92853 1.27664 0.97792 0.89323 1.24670 0.97347 1.00322 0.96845 1.69702 1.34014 1.42733 1.11809 0.86531 0.86581 0.78476 0.76876 1.20996 1.20298 1.21714 0.94567 0.92219 0.90662 0.90666 0.93737 0.91017 0.91176 0.90786 0.91020 0.95083 0.95341 0.80639 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.26 60.07 0.50 0.68 16 2 N -0.53 -7.90 5.44 -231.56 -1.26 -9.16 16 3 C 0.04 0.52 6.73 -2.30 -0.02 0.50 16 4 C -0.13 -1.63 7.08 -24.45 -0.17 -1.80 16 5 C -0.13 -2.07 6.17 -24.77 -0.15 -2.22 16 6 C 0.06 1.00 3.49 -66.73 -0.23 0.77 16 7 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 8 C 0.14 2.92 4.31 -4.04 -0.02 2.90 16 9 N -0.75 -18.41 5.19 -59.90 -0.31 -18.72 16 10 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 11 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 12 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 13 N -0.93 -29.75 13.97 55.49 0.78 -28.97 16 14 Si 0.89 22.40 27.74 -169.99 -4.71 17.69 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H 0.04 0.53 6.52 -51.93 -0.34 0.19 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.07 1.08 6.72 -51.93 -0.35 0.74 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.55 7.80 -51.93 -0.40 0.15 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 26 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 27 H 0.03 0.64 6.38 -51.93 -0.33 0.31 16 28 H 0.03 0.60 6.85 -51.93 -0.36 0.24 16 29 H 0.36 8.59 5.43 -40.82 -0.22 8.37 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 237.79 15.07 3.58 3.58 Total: -1.00 -31.23 237.79 -6.81 -38.04 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.53 Total: 3.92 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.35 Total: -6.37 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.80 Total: -56.86 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.23 -6.81 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226047095.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.688 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds