Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47845 * 110.99962 * 2 1 4 4 C 1.54906 * 104.80035 * 146.36236 * 3 2 1 5 5 C 1.55397 * 101.73848 * 323.02314 * 4 3 2 6 6 C 1.47441 * 111.00188 * 120.84090 * 2 1 3 7 7 H 1.09006 * 109.88578 * 117.17632 * 6 2 1 8 8 C 1.53005 * 109.88736 * 356.15393 * 6 2 1 9 9 N 1.46507 * 109.46643 * 176.36581 * 8 6 2 10 10 C 1.36937 * 119.99524 * 174.83754 * 9 8 6 11 11 H 1.07999 * 119.99922 * 0.02562 * 10 9 8 12 12 C 1.38808 * 119.99855 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00103 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00084 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47310 * 270.00102 * 14 12 10 16 16 H 1.48505 * 109.47239 * 30.00158 * 14 12 10 17 17 H 1.48500 * 109.47384 * 149.99978 * 14 12 10 18 18 H 1.08995 * 109.47036 * 297.84531 * 1 2 3 19 19 H 1.08996 * 109.47192 * 57.84345 * 1 2 3 20 20 H 1.08999 * 109.46795 * 177.84901 * 1 2 3 21 21 H 1.09004 * 110.37690 * 265.19709 * 3 2 1 22 22 H 1.09001 * 110.37346 * 27.42615 * 3 2 1 23 23 H 1.08998 * 110.98701 * 81.01602 * 4 3 2 24 24 H 1.08990 * 110.99417 * 204.80253 * 4 3 2 25 25 H 1.08997 * 110.68002 * 277.17150 * 5 4 3 26 26 H 1.09008 * 110.84802 * 153.86007 * 5 4 3 27 27 H 1.08999 * 109.47156 * 56.36281 * 8 6 2 28 28 H 1.08998 * 109.46700 * 296.35930 * 8 6 2 29 29 H 0.96996 * 120.00294 * 354.83918 * 9 8 6 30 30 H 0.96998 * 120.00195 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9182 0.2790 1.9328 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8675 8 6 0.8438 -1.1357 2.0902 9 7 1.3716 -1.9104 3.2161 10 6 0.5343 -2.3140 4.2218 11 1 -0.5151 -2.0614 4.1847 12 6 1.0342 -3.0485 5.2882 13 7 0.2294 -3.4368 6.2546 14 14 2.8488 -3.4870 5.3513 15 1 3.0670 -4.7903 4.6736 16 1 3.6370 -2.4332 4.6631 17 1 3.2853 -3.5862 6.7672 18 1 -0.3633 0.4800 0.9086 19 1 -0.3633 0.5469 -0.8700 20 1 -0.3633 -1.0270 -0.0386 21 1 2.2147 1.7039 -1.0182 22 1 1.2881 2.0595 0.4707 23 1 4.1302 0.9282 0.2243 24 1 3.5498 2.2722 1.2634 25 1 2.3783 0.7706 2.7421 26 1 3.8019 -0.2335 2.3133 27 1 0.1441 -1.7494 1.5230 28 1 0.3292 -0.2517 2.4670 29 1 2.3140 -2.1375 3.2492 30 1 0.5786 -3.9504 6.9997 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226047095.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -1.642759 kcal Electronic energy + Delta-G solvation = -11562.944611 eV Core-core repulsion = 9585.635688 eV Total energy + Delta-G solvation = -1977.308923 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43723 -36.50024 -33.64440 -33.06762 -30.60013 -26.61989 -26.52845 -24.02437 -22.06777 -20.93057 -19.49338 -17.43809 -16.62411 -16.44458 -15.54965 -15.51965 -14.74563 -14.68692 -14.36542 -13.57360 -13.30441 -13.15504 -12.85939 -12.32062 -12.28209 -12.14181 -11.97397 -11.87539 -11.77805 -11.56573 -10.99731 -9.38599 -9.24615 -8.06718 -5.41451 1.35805 1.40032 1.47252 2.45645 2.97239 3.24350 3.65807 3.70404 3.85837 3.94583 4.31186 4.38375 4.45444 4.58388 4.64065 4.68416 4.83938 4.97954 5.02620 5.06283 5.12363 5.23696 5.37154 5.68502 5.97575 6.09916 6.17765 7.02639 7.77190 7.98400 9.14723 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058732 B = 0.011129 C = 0.009882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.630940 B = 2515.305383 C = 2832.774104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.037 3.963 4 C -0.120 4.120 5 C -0.136 4.136 6 C 0.065 3.935 7 H 0.081 0.919 8 C 0.146 3.854 9 N -0.753 5.753 10 C -0.240 4.240 11 H 0.053 0.947 12 C -0.063 4.063 13 N -0.983 5.983 14 Si 0.958 3.042 15 H -0.276 1.276 16 H -0.249 1.249 17 H -0.293 1.293 18 H 0.024 0.976 19 H 0.085 0.915 20 H 0.064 0.936 21 H 0.098 0.902 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.020 0.980 29 H 0.367 0.633 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 9.676 -13.087 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.256 5.256 3 C -0.090 4.090 4 C -0.158 4.158 5 C -0.175 4.175 6 C -0.043 4.043 7 H 0.099 0.901 8 C 0.019 3.981 9 N -0.400 5.400 10 C -0.371 4.371 11 H 0.071 0.929 12 C -0.254 4.254 13 N -0.633 5.633 14 Si 0.784 3.216 15 H -0.202 1.202 16 H -0.174 1.174 17 H -0.219 1.219 18 H 0.043 0.957 19 H 0.104 0.896 20 H 0.083 0.917 21 H 0.116 0.884 22 H 0.065 0.935 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.200 0.800 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.886 9.418 -13.464 17.815 hybrid contribution 0.164 -0.242 1.401 1.431 sum 7.050 9.176 -12.063 16.716 Atomic orbital electron populations 1.22587 0.87611 1.02369 1.00894 1.63818 1.08582 1.15228 1.37924 1.23194 0.95769 0.88596 1.01415 1.22743 0.97652 0.99332 0.96059 1.22850 0.99282 0.97246 0.98135 1.22524 0.95012 0.97766 0.89016 0.90122 1.21352 0.95497 0.93433 0.87779 1.42605 1.07659 1.65958 1.23734 1.19000 0.92012 1.27093 0.98955 0.92919 1.25550 1.02771 1.00662 0.96452 1.69888 1.36587 1.44055 1.12776 0.85371 0.80318 0.78969 0.76939 1.20233 1.17387 1.21924 0.95734 0.89625 0.91698 0.88408 0.93540 0.89755 0.89270 0.92621 0.90887 0.95558 0.96167 0.79956 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 8.26 127.69 1.05 1.42 16 2 N -0.53 -14.67 5.44 -886.53 -4.83 -19.50 16 3 C 0.04 0.83 6.73 86.77 0.58 1.41 16 4 C -0.12 -2.56 7.08 32.07 0.23 -2.34 16 5 C -0.14 -3.95 6.17 31.86 0.20 -3.76 16 6 C 0.07 2.11 3.49 45.26 0.16 2.26 16 7 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 8 C 0.15 5.90 4.31 86.38 0.37 6.27 16 9 N -0.75 -36.56 5.19 -343.44 -1.78 -38.35 16 10 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 11 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 12 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 13 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 14 Si 0.96 45.92 27.74 68.60 1.90 47.82 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H 0.02 0.70 6.52 -2.39 -0.02 0.68 16 19 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 20 H 0.06 1.83 6.72 -2.39 -0.02 1.81 16 21 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.05 1.02 7.80 -2.39 -0.02 1.00 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.81 7.79 -2.39 -0.02 1.79 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.03 1.10 6.38 -2.39 -0.02 1.08 16 28 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 29 H 0.37 16.83 5.43 -92.71 -0.50 16.33 16 30 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -67.15 237.79 0.08 -67.07 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.55 Total: 17.91 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.94 Total: -11.29 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -6.31 Total: -121.52 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -67.15 0.08 -67.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226047095.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.430 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds