Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 110.35186 * 2 1 4 4 C 1.46896 * 111.00303 * 299.30917 * 3 2 1 5 5 C 1.50701 * 109.47449 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99860 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00334 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47421 * 89.99776 * 9 7 5 11 11 H 1.48503 * 109.47086 * 209.99833 * 9 7 5 12 12 H 1.48503 * 109.47226 * 329.99669 * 9 7 5 13 13 C 1.54593 * 110.30814 * 122.14378 * 2 1 3 14 14 C 1.54933 * 102.92591 * 96.96030 * 13 2 1 15 15 N 1.48538 * 103.22579 * 37.41127 * 14 13 2 16 16 C 1.47899 * 105.82096 * 320.79703 * 15 14 13 17 17 H 1.09000 * 109.47246 * 180.68897 * 1 2 3 18 18 H 1.09002 * 109.47576 * 300.69060 * 1 2 3 19 19 H 1.09002 * 109.47260 * 60.68881 * 1 2 3 20 20 H 1.00901 * 110.99999 * 175.35870 * 3 2 1 21 21 H 1.08993 * 109.47498 * 300.00232 * 4 3 2 22 22 H 1.09003 * 109.47185 * 60.00024 * 4 3 2 23 23 H 0.97002 * 119.99753 * 179.97438 * 8 7 5 24 24 H 1.09007 * 110.72450 * 215.32021 * 13 2 1 25 25 H 1.09004 * 110.72461 * 338.59944 * 13 2 1 26 26 H 1.09007 * 110.66620 * 278.98326 * 14 13 2 27 27 H 1.08993 * 110.67451 * 155.84848 * 14 13 2 28 28 H 1.00900 * 110.99552 * 81.30950 * 15 14 13 29 29 H 1.09004 * 109.91646 * 265.97786 * 16 15 14 30 30 H 1.09001 * 110.08341 * 144.77463 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0409 1.3773 0.0000 4 6 1.5946 2.1044 -1.1958 5 6 2.1364 3.5102 -1.1605 6 1 2.7512 3.8312 -0.3326 7 6 1.8473 4.3864 -2.1849 8 7 1.0990 3.9953 -3.1932 9 14 2.5195 6.1287 -2.1414 10 1 3.8421 6.1660 -2.8158 11 1 1.5800 7.0395 -2.8435 12 1 2.6710 6.5658 -0.7302 13 6 2.0665 -0.7714 1.2276 14 6 2.3584 -2.1797 0.6515 15 7 2.8809 -1.8891 -0.7082 16 6 2.0645 -0.7683 -1.2229 17 1 -0.3634 -1.0276 0.0124 18 1 -0.3634 0.5245 0.8837 19 1 -0.3634 0.5031 -0.8961 20 1 3.0469 1.3898 0.0762 21 1 1.9603 1.5960 -2.0878 22 1 0.5052 2.1357 -1.2165 23 1 0.8953 4.6120 -3.9138 24 1 2.9806 -0.3112 1.6031 25 1 1.3102 -0.8241 2.0108 26 1 1.4433 -2.7691 0.5941 27 1 3.1104 -2.6924 1.2511 28 1 3.8579 -1.6390 -0.6743 29 1 1.2324 -1.1548 -1.8114 30 1 2.6784 -0.1090 -1.8365 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230743407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = -25.499268 kcal Electronic energy + Delta-G solvation = -11555.042583 eV Core-core repulsion = 9576.699164 eV Total energy + Delta-G solvation = -1978.343419 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.41607 -36.14198 -34.35518 -31.45383 -29.88073 -28.32292 -26.26149 -24.08984 -22.40376 -20.06592 -18.73001 -17.40749 -16.75249 -16.34809 -15.51262 -15.25941 -14.81015 -14.42530 -13.82409 -13.52974 -13.05827 -13.00710 -12.96206 -12.69331 -12.37221 -12.26201 -11.99002 -11.81230 -11.36188 -11.25881 -10.68137 -9.86934 -8.91691 -8.23161 -6.33971 1.39264 1.40802 1.52503 2.38537 3.09783 3.22909 3.61342 3.77001 3.89688 4.16675 4.35236 4.48399 4.56078 4.75605 4.82266 4.92705 4.97501 5.10155 5.17337 5.26163 5.30604 5.39535 5.61452 5.72651 6.03900 6.36192 6.49060 6.73770 6.89313 7.36638 8.87943 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.073135 B = 0.009401 C = 0.009332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.761548 B = 2977.702164 C = 2999.810941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.076 3.924 3 N -0.676 5.676 4 C 0.209 3.791 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.265 1.265 13 C -0.136 4.136 14 C 0.047 3.953 15 N -0.677 5.677 16 C 0.020 3.980 17 H 0.076 0.924 18 H 0.057 0.943 19 H 0.031 0.969 20 H 0.330 0.670 21 H -0.034 1.034 22 H 0.005 0.995 23 H 0.265 0.735 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.340 0.660 29 H 0.064 0.936 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -9.291 7.161 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 N -0.306 5.306 4 C 0.081 3.919 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.190 1.190 13 C -0.175 4.175 14 C -0.083 4.083 15 N -0.304 5.304 16 C -0.112 4.112 17 H 0.095 0.905 18 H 0.076 0.924 19 H 0.051 0.949 20 H 0.148 0.852 21 H -0.016 1.016 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.587 -9.547 7.030 11.962 hybrid contribution 0.895 1.483 -0.693 1.865 sum 2.482 -8.065 6.337 10.553 Atomic orbital electron populations 1.21746 0.93747 1.01566 1.01211 1.22362 0.96124 0.88385 0.94859 1.60724 1.15066 1.12674 1.42123 1.19222 0.94728 0.92126 0.85822 1.21581 1.31906 0.97796 1.06350 0.92066 1.25931 0.95420 1.03499 0.94830 1.70093 1.38799 1.37505 1.10828 0.85359 0.78128 0.78464 0.78500 1.19724 1.20685 1.18983 1.23110 1.01814 0.95973 0.96626 1.23206 1.01588 0.95475 0.87993 1.62715 1.07050 1.37826 1.22768 1.23404 0.97868 0.91995 0.97938 0.90518 0.92435 0.94944 0.85248 1.01648 0.97693 0.92671 0.91072 0.89564 0.89785 0.88268 0.84416 0.91796 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 7.96 71.98 0.57 -3.75 16 2 C 0.08 2.63 0.88 4.41 0.00 2.64 16 3 N -0.68 -29.03 6.09 -469.82 -2.86 -31.89 16 4 C 0.21 11.18 4.76 85.56 0.41 11.59 16 5 C -0.54 -31.01 9.32 25.60 0.24 -30.77 16 6 H 0.06 3.44 7.81 -2.91 -0.02 3.41 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 9 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 C -0.14 -3.57 6.30 31.80 0.20 -3.37 16 14 C 0.05 1.05 7.55 86.65 0.65 1.70 16 15 N -0.68 -18.77 7.51 -502.19 -3.77 -22.55 16 16 C 0.02 0.69 6.39 86.45 0.55 1.24 16 17 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 18 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 19 H 0.03 1.29 6.54 -2.39 -0.02 1.28 16 20 H 0.33 13.60 8.56 -89.69 -0.77 12.83 16 21 H -0.03 -1.96 6.39 -2.39 -0.02 -1.97 16 22 H 0.01 0.29 6.41 -2.39 -0.02 0.28 16 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 24 H 0.07 1.85 7.90 -2.38 -0.02 1.84 16 25 H 0.09 2.07 7.85 -2.38 -0.02 2.05 16 26 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.34 8.65 8.92 -89.69 -0.80 7.85 16 29 H 0.06 2.31 7.68 -2.39 -0.02 2.29 16 30 H 0.04 1.82 6.42 -2.39 -0.02 1.80 16 Total: -1.00 -63.48 241.71 -1.66 -65.14 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.43 Total: 19.23 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.09 Total: -20.17 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -6.35 Total: -110.92 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -63.48 -1.66 -65.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230743407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.640 kcal (2) G-P(sol) polarization free energy of solvation -63.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds