Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.64787 * 2 1 4 4 C 1.54932 * 110.72309 * 123.15669 * 2 1 3 5 5 N 1.48531 * 103.22825 * 155.94556 * 4 2 1 6 6 C 1.46903 * 111.00193 * 200.27535 * 5 4 2 7 7 C 1.50694 * 109.47330 * 170.00060 * 6 5 4 8 8 H 1.08002 * 120.00179 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00472 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99350 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00608 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47339 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47239 * 300.00306 * 11 9 7 14 14 H 1.48504 * 109.46636 * 59.99865 * 11 9 7 15 15 C 1.47894 * 105.82290 * 320.79048 * 5 4 2 16 16 C 1.54003 * 107.05740 * 25.33104 * 15 5 4 17 17 H 1.08994 * 110.30749 * 239.86137 * 16 15 5 18 18 N 1.46894 * 110.39206 * 117.73014 * 16 15 5 19 19 H 1.08996 * 109.46674 * 298.30452 * 1 2 3 20 20 H 1.09004 * 109.46707 * 58.29627 * 1 2 3 21 21 H 1.08998 * 109.47804 * 178.29854 * 1 2 3 22 22 H 1.09005 * 110.66715 * 37.51191 * 4 2 1 23 23 H 1.09003 * 110.81215 * 274.44797 * 4 2 1 24 24 H 1.09005 * 109.46786 * 50.00619 * 6 5 4 25 25 H 1.08998 * 109.47526 * 290.00339 * 6 5 4 26 26 H 0.97005 * 119.99661 * 179.97438 * 10 9 7 27 27 H 1.09004 * 109.91875 * 144.68224 * 15 5 4 28 28 H 1.08997 * 109.92040 * 265.97933 * 15 5 4 29 29 H 1.00906 * 111.00126 * 64.23895 * 18 16 15 30 30 H 1.00903 * 110.99869 * 188.18638 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7925 1.2131 5 7 3.4334 -1.2043 0.7658 6 6 3.9243 -2.3432 1.5531 7 6 5.1791 -2.8875 0.9207 8 1 5.5729 -2.4326 0.0238 9 6 5.8246 -3.9663 1.4869 10 7 5.3454 -4.5199 2.5794 11 14 7.3797 -4.6415 0.7026 12 1 7.8760 -5.7927 1.4985 13 1 7.0821 -5.0879 -0.6820 14 1 8.4177 -3.5800 0.6681 15 6 3.2941 -1.5671 -0.6611 16 6 2.0808 -0.7922 -1.2080 17 1 1.3268 -1.4847 -1.5818 18 7 2.4994 0.1285 -2.2734 19 1 -0.3632 0.4873 0.9048 20 1 -0.3633 0.5401 -0.8744 21 1 -0.3635 -1.0272 -0.0305 22 1 1.4577 -1.6658 1.4144 23 1 2.1414 -0.1555 2.0954 24 1 3.1627 -3.1226 1.5783 25 1 4.1425 -2.0153 2.5695 26 1 5.7993 -5.2791 2.9776 27 1 4.1937 -1.2815 -1.2065 28 1 3.1235 -2.6394 -0.7567 29 1 2.8610 -0.3781 -3.0676 30 1 1.7403 0.7347 -2.5462 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235580619.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = -27.961563 kcal Electronic energy + Delta-G solvation = -11495.470368 eV Core-core repulsion = 9517.020176 eV Total energy + Delta-G solvation = -1978.450192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13107 -35.86620 -34.24238 -32.91552 -29.48595 -28.20578 -26.11891 -23.85494 -21.82989 -20.82355 -18.28055 -17.25008 -16.86249 -16.16111 -15.86742 -15.25362 -14.93973 -14.43224 -13.93892 -13.44706 -13.29625 -13.26971 -12.80038 -12.57258 -12.43998 -12.13239 -11.88401 -11.61240 -11.45165 -11.18931 -10.66696 -9.60100 -9.09543 -8.25041 -6.35707 1.38050 1.42118 1.50190 2.37796 3.07561 3.36911 3.59878 3.71006 3.77982 4.29274 4.36986 4.57322 4.62491 4.74087 4.81440 4.94409 5.00955 5.02377 5.12270 5.29078 5.30817 5.40604 5.60500 5.93494 6.22723 6.34118 6.52622 6.70568 6.80412 7.34318 8.86896 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062761 B = 0.010358 C = 0.009209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.030728 B = 2702.669259 C = 3039.887459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.088 0.912 4 C 0.032 3.968 5 N -0.527 5.527 6 C 0.199 3.801 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.933 5.933 11 Si 0.972 3.028 12 H -0.279 1.279 13 H -0.266 1.266 14 H -0.268 1.268 15 C 0.061 3.939 16 C 0.090 3.910 17 H 0.047 0.953 18 N -0.840 5.840 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.075 0.925 24 H -0.036 1.036 25 H 0.003 0.997 26 H 0.266 0.734 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.347 0.653 30 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 6.995 -8.151 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.096 4.096 5 N -0.251 5.251 6 C 0.072 3.928 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.796 3.204 12 H -0.205 1.205 13 H -0.191 1.191 14 H -0.193 1.193 15 C -0.067 4.067 16 C -0.022 4.022 17 H 0.065 0.935 18 N -0.372 5.372 19 H 0.087 0.913 20 H 0.094 0.906 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.094 0.906 24 H -0.019 1.019 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.161 0.839 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.533 7.543 -7.416 12.986 hybrid contribution -0.359 -1.897 -0.462 1.985 sum -7.892 5.646 -7.878 12.499 Atomic orbital electron populations 1.21757 0.92466 1.01954 1.03147 1.22094 0.96378 0.99399 0.92082 0.89371 1.23357 0.89290 0.98073 0.98925 1.64696 1.22321 1.35311 1.02820 1.19549 0.93961 0.86224 0.93073 1.21468 1.09952 1.14180 1.11471 0.92030 1.25970 1.01412 0.96846 0.95459 1.70086 1.41840 1.23970 1.21413 0.85399 0.78705 0.77812 0.78511 1.20457 1.19099 1.19319 1.22607 0.98230 0.96041 0.89864 1.22199 0.94073 0.93162 0.92790 0.93501 1.58650 1.40404 1.24553 1.13612 0.91323 0.90617 0.93152 0.95300 0.90611 1.01861 0.97926 0.92536 0.91784 0.96255 0.83928 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.17 71.98 0.66 -2.24 16 2 C -0.08 -2.34 3.32 -9.59 -0.03 -2.37 16 3 H 0.09 2.60 8.06 -2.39 -0.02 2.58 16 4 C 0.03 1.21 6.00 86.65 0.52 1.73 16 5 N -0.53 -24.86 5.39 -887.57 -4.78 -29.65 16 6 C 0.20 11.31 4.76 85.55 0.41 11.71 16 7 C -0.53 -31.63 8.42 25.60 0.22 -31.42 16 8 H 0.06 3.59 6.84 -2.91 -0.02 3.57 16 9 C 0.00 0.08 5.46 84.66 0.46 0.55 16 10 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 11 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.06 2.57 5.28 86.45 0.46 3.03 16 16 C 0.09 2.75 3.70 45.80 0.17 2.92 16 17 H 0.05 1.33 7.83 -2.39 -0.02 1.31 16 18 N -0.84 -21.05 9.14 -165.03 -1.51 -22.56 16 19 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 21 H 0.05 1.11 8.11 -2.39 -0.02 1.09 16 22 H 0.03 1.13 7.76 -2.38 -0.02 1.11 16 23 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 24 H -0.04 -2.20 7.89 -2.38 -0.02 -2.22 16 25 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.06 2.80 7.51 -2.38 -0.02 2.78 16 28 H 0.02 0.88 7.59 -2.39 -0.02 0.86 16 29 H 0.35 7.78 9.08 -89.69 -0.81 6.97 16 30 H 0.35 6.72 9.02 -89.69 -0.81 5.91 16 Total: -1.00 -67.16 245.34 -1.62 -68.78 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -0.50 Total: 9.52 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 2.86 Total: -16.09 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -6.01 Total: -109.61 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.16 -1.62 -68.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235580619.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.822 kcal (2) G-P(sol) polarization free energy of solvation -67.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds