Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48495 * 109.46945 * 239.99863 * 3 2 1 5 5 H 1.48498 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46996 * 119.99824 * 3 2 1 7 7 C 1.37870 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00158 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47025 * 179.97438 * 11 10 9 13 13 H 1.09008 * 110.33236 * 294.20021 * 12 11 10 14 14 C 1.55380 * 110.44251 * 171.92213 * 12 11 10 15 15 C 1.55142 * 101.43737 * 204.06420 * 14 12 11 16 16 C 1.54312 * 103.17714 * 35.64527 * 15 14 12 17 17 N 1.47443 * 107.23612 * 337.62814 * 16 15 14 18 18 H 0.96996 * 120.00788 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.47059 * 59.99995 * 9 7 2 20 20 H 1.09007 * 109.46809 * 299.99976 * 9 7 2 21 21 H 1.00906 * 110.99619 * 303.95781 * 10 9 7 22 22 H 1.09006 * 109.46853 * 59.99878 * 11 10 9 23 23 H 1.08996 * 109.46932 * 299.99583 * 11 10 9 24 24 H 1.09003 * 111.17446 * 86.01249 * 14 12 11 25 25 H 1.08996 * 111.00619 * 322.04920 * 14 12 11 26 26 H 1.09002 * 110.70816 * 277.17375 * 15 14 12 27 27 H 1.09005 * 110.70106 * 154.11515 * 15 14 12 28 28 H 1.08997 * 109.89327 * 97.03090 * 16 15 14 29 29 H 1.09003 * 109.89220 * 218.21893 * 16 15 14 30 30 H 1.00900 * 111.00799 * 121.27473 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 0.0001 12 6 2.5306 -6.0429 -0.0006 13 1 3.0947 -6.0435 -0.9333 14 6 1.8241 -7.4115 0.2046 15 6 2.9774 -8.2683 0.7901 16 6 3.7571 -7.2608 1.6608 17 7 3.4449 -5.9119 1.1538 18 1 -0.4851 0.8399 0.0004 19 1 0.6242 -2.5567 -0.8902 20 1 0.6248 -2.5571 0.8898 21 1 2.8407 -3.5485 -0.7819 22 1 0.8803 -4.9817 -0.8897 23 1 0.8811 -4.9812 0.8903 24 1 1.4760 -7.8211 -0.7437 25 1 1.0026 -7.3244 0.9156 26 1 3.6099 -8.6594 -0.0068 27 1 2.5824 -9.0805 1.4005 28 1 3.4425 -7.3479 2.7007 29 1 4.8275 -7.4495 1.5780 30 1 3.0348 -5.3398 1.8767 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236191735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = -9.421418 kcal Electronic energy + Delta-G solvation = -11085.691959 eV Core-core repulsion = 9108.045728 eV Total energy + Delta-G solvation = -1977.646231 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51595 -34.92556 -32.42349 -29.80006 -29.59066 -26.39253 -23.52198 -21.42551 -20.64749 -20.32409 -16.53313 -15.74796 -15.51417 -14.57029 -14.35146 -13.72096 -13.50393 -12.88728 -12.42422 -11.96143 -11.63821 -11.32024 -11.28672 -10.99078 -10.88312 -10.63528 -10.57654 -10.47771 -9.79267 -9.13994 -8.44533 -8.10389 -7.21172 -5.99781 -4.01441 3.36931 3.40120 3.43992 4.39879 4.48915 4.78200 4.87307 5.10150 5.33594 5.36097 5.47614 5.64272 5.69469 5.80384 5.89872 5.99275 6.05731 6.19729 6.22540 6.53569 7.19276 7.31430 7.45506 7.79260 7.83211 8.16676 8.45663 8.66832 9.08403 9.63457 11.11438 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.090427 B = 0.007362 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.566746 B = 3802.321607 C = 4000.456568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.681 5.681 11 C 0.054 3.946 12 C 0.083 3.917 13 H 0.079 0.921 14 C -0.150 4.150 15 C -0.140 4.140 16 C 0.044 3.956 17 N -0.667 5.667 18 H 0.261 0.739 19 H -0.016 1.016 20 H 0.026 0.974 21 H 0.331 0.669 22 H 0.023 0.977 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -13.283 0.889 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.311 5.311 11 C -0.077 4.077 12 C -0.027 4.027 13 H 0.097 0.903 14 C -0.190 4.190 15 C -0.179 4.179 16 C -0.085 4.085 17 N -0.298 5.298 18 H 0.071 0.929 19 H 0.002 0.998 20 H 0.044 0.956 21 H 0.148 0.852 22 H 0.041 0.959 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.182 -13.044 1.210 13.751 hybrid contribution -0.879 0.601 -0.473 1.165 sum 3.302 -12.443 0.737 12.895 Atomic orbital electron populations 1.69954 1.06109 1.26854 1.51094 1.24997 0.94872 0.99388 0.95395 0.86527 0.79387 0.82602 0.78680 1.20264 1.21402 1.20139 1.21172 0.93570 0.90223 1.50124 0.91897 1.19558 0.90633 0.87599 0.95564 1.60583 1.20651 1.00650 1.49245 1.22141 0.94826 0.90837 0.99905 1.22626 0.91974 0.92623 0.95487 0.90329 1.23277 0.97903 0.96622 1.01216 1.22762 0.97369 0.98110 0.99653 1.22655 1.00005 0.88808 0.97061 1.61666 1.46480 1.11054 1.10583 0.92912 0.99810 0.95631 0.85220 0.95857 0.92014 0.91074 0.91396 0.91358 0.91582 0.93554 0.91320 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.17 5.44 -4.98 -0.03 5.14 16 10 N -0.68 -14.89 6.23 -115.06 -0.72 -15.61 16 11 C 0.05 0.96 5.07 -3.82 -0.02 0.94 16 12 C 0.08 1.24 3.63 -65.93 -0.24 1.00 16 13 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 14 C -0.15 -1.83 6.54 -24.33 -0.16 -1.99 16 15 C -0.14 -1.53 6.93 -24.91 -0.17 -1.70 16 16 C 0.04 0.55 7.58 -2.84 -0.02 0.53 16 17 N -0.67 -10.25 7.11 -103.58 -0.74 -10.99 16 18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 19 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.33 7.11 8.72 -39.29 -0.34 6.77 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.35 5.75 8.32 -39.29 -0.33 5.42 16 LS Contribution 249.97 15.07 3.77 3.77 Total: -1.00 -29.93 249.97 -7.88 -37.81 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.85 Total: 4.33 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.06 Total: -9.74 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.72 Total: -53.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.93 -7.88 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.389 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds