Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99631 * 2 1 4 4 H 1.48495 * 109.46945 * 239.99863 * 3 2 1 5 5 H 1.48498 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46996 * 119.99824 * 3 2 1 7 7 C 1.37870 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00122 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00158 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47025 * 179.97438 * 11 10 9 13 13 H 1.09008 * 110.33236 * 294.20021 * 12 11 10 14 14 C 1.55380 * 110.44251 * 171.92213 * 12 11 10 15 15 C 1.55142 * 101.43737 * 204.06420 * 14 12 11 16 16 C 1.54312 * 103.17714 * 35.64527 * 15 14 12 17 17 N 1.47443 * 107.23612 * 337.62814 * 16 15 14 18 18 H 0.96996 * 120.00788 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.47059 * 59.99995 * 9 7 2 20 20 H 1.09007 * 109.46809 * 299.99976 * 9 7 2 21 21 H 1.00906 * 110.99619 * 303.95781 * 10 9 7 22 22 H 1.09006 * 109.46853 * 59.99878 * 11 10 9 23 23 H 1.08996 * 109.46932 * 299.99583 * 11 10 9 24 24 H 1.09003 * 111.17446 * 86.01249 * 14 12 11 25 25 H 1.08996 * 111.00619 * 322.04920 * 14 12 11 26 26 H 1.09002 * 110.70816 * 277.17375 * 15 14 12 27 27 H 1.09005 * 110.70106 * 154.11515 * 15 14 12 28 28 H 1.08997 * 109.89327 * 97.03090 * 16 15 14 29 29 H 1.09003 * 109.89220 * 218.21893 * 16 15 14 30 30 H 1.00900 * 111.00799 * 121.27473 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9070 0.0001 12 6 2.5306 -6.0429 -0.0006 13 1 3.0947 -6.0435 -0.9333 14 6 1.8241 -7.4115 0.2046 15 6 2.9774 -8.2683 0.7901 16 6 3.7571 -7.2608 1.6608 17 7 3.4449 -5.9119 1.1538 18 1 -0.4851 0.8399 0.0004 19 1 0.6242 -2.5567 -0.8902 20 1 0.6248 -2.5571 0.8898 21 1 2.8407 -3.5485 -0.7819 22 1 0.8803 -4.9817 -0.8897 23 1 0.8811 -4.9812 0.8903 24 1 1.4760 -7.8211 -0.7437 25 1 1.0026 -7.3244 0.9156 26 1 3.6099 -8.6594 -0.0068 27 1 2.5824 -9.0805 1.4005 28 1 3.4425 -7.3479 2.7007 29 1 4.8275 -7.4495 1.5780 30 1 3.0348 -5.3398 1.8767 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236191735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = -32.257088 kcal Electronic energy + Delta-G solvation = -11086.682188 eV Core-core repulsion = 9108.045728 eV Total energy + Delta-G solvation = -1978.636460 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.67044 -36.71510 -34.50139 -31.11736 -30.81868 -28.25541 -25.14140 -23.33437 -21.68888 -21.54602 -18.60324 -17.02651 -16.87980 -16.46687 -15.89394 -15.20901 -14.80387 -14.37635 -14.15713 -13.59143 -13.04131 -12.90728 -12.82642 -12.58728 -12.31617 -12.20981 -11.96674 -11.71041 -11.56294 -11.20352 -10.65602 -9.28142 -9.04024 -8.22389 -6.33649 1.41714 1.45686 1.53716 2.40808 3.10752 3.24113 3.69615 3.82420 3.90729 4.09350 4.34236 4.46480 4.59690 4.64845 4.73374 4.95557 5.02730 5.06582 5.09647 5.20488 5.26332 5.38374 5.61327 6.00615 6.14323 6.45582 6.56253 6.73539 6.89729 7.37481 8.89134 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.090427 B = 0.007362 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.566746 B = 3802.321607 C = 4000.456568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.677 5.677 11 C 0.056 3.944 12 C 0.088 3.912 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.132 4.132 16 C 0.041 3.959 17 N -0.685 5.685 18 H 0.265 0.735 19 H -0.042 1.042 20 H -0.001 1.001 21 H 0.334 0.666 22 H 0.024 0.976 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 -13.896 0.903 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.308 5.308 11 C -0.074 4.074 12 C -0.022 4.022 13 H 0.095 0.905 14 C -0.185 4.185 15 C -0.170 4.170 16 C -0.089 4.089 17 N -0.315 5.315 18 H 0.074 0.926 19 H -0.024 1.024 20 H 0.017 0.983 21 H 0.151 0.849 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.213 -13.693 1.219 14.702 hybrid contribution -1.210 0.734 -0.467 1.490 sum 4.002 -12.960 0.751 13.584 Atomic orbital electron populations 1.70083 1.07834 1.28097 1.51586 1.25973 0.95804 1.03457 0.94538 0.85356 0.78074 0.77507 0.79176 1.19096 1.20696 1.19336 1.21527 0.93821 0.91469 1.50596 0.91796 1.19213 0.90646 0.89135 0.93000 1.60463 1.19867 1.01059 1.49372 1.22203 0.95620 0.89975 0.99601 1.22543 0.91380 0.92808 0.95505 0.90512 1.23241 0.98183 0.94911 1.02139 1.22739 0.96566 0.97921 0.99805 1.22755 1.00565 0.87639 0.97893 1.61692 1.46441 1.12899 1.10498 0.92595 1.02400 0.98320 0.84869 0.95827 0.92518 0.89653 0.91434 0.90532 0.89520 0.92603 0.90875 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.44 0.28 -57.22 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.46 5.44 85.56 0.47 11.93 16 10 N -0.68 -30.05 6.23 -517.93 -3.22 -33.27 16 11 C 0.06 2.02 5.07 86.30 0.44 2.46 16 12 C 0.09 2.53 3.63 45.55 0.17 2.70 16 13 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 14 C -0.15 -3.21 6.54 32.15 0.21 -3.00 16 15 C -0.13 -2.48 6.93 31.77 0.22 -2.26 16 16 C 0.04 0.91 7.58 86.64 0.66 1.57 16 17 N -0.69 -20.35 7.11 -481.61 -3.42 -23.77 16 18 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 19 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 20 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 21 H 0.33 14.46 8.72 -89.69 -0.78 13.68 16 22 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.51 8.01 -2.39 -0.02 1.49 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.34 11.07 8.32 -89.69 -0.75 10.33 16 Total: -1.00 -63.72 249.97 -1.89 -65.62 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.41 Total: 18.84 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 2.86 Total: -17.28 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.36 Total: -114.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.72 -1.89 -65.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.358 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds