Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99608 * 2 1 4 4 H 1.48504 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46962 * 299.99790 * 3 2 1 6 6 H 1.48497 * 109.47126 * 60.00134 * 3 2 1 7 7 C 1.37876 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99939 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.59832 * 66.55172 * 12 11 10 14 14 C 1.54933 * 110.67032 * 189.74085 * 12 11 10 15 15 C 1.54593 * 102.92591 * 155.84966 * 14 12 11 16 16 C 1.53997 * 105.13807 * 338.04317 * 15 14 12 17 17 N 1.47899 * 107.05889 * 358.77516 * 16 15 14 18 18 H 0.96998 * 120.00293 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47405 * 59.99358 * 9 7 2 20 20 H 1.09006 * 109.46845 * 299.99504 * 9 7 2 21 21 H 1.00900 * 111.00301 * 303.94788 * 10 9 7 22 22 H 1.09004 * 109.46379 * 59.99951 * 11 10 9 23 23 H 1.08995 * 109.46813 * 300.00454 * 11 10 9 24 24 H 1.09007 * 110.72333 * 37.48893 * 14 12 11 25 25 H 1.09004 * 110.72411 * 274.21087 * 14 12 11 26 26 H 1.09004 * 110.30922 * 219.12663 * 15 14 12 27 27 H 1.08998 * 110.30989 * 96.95784 * 15 14 12 28 28 H 1.09004 * 109.91456 * 118.12612 * 16 15 14 29 29 H 1.09001 * 109.91811 * 239.22178 * 16 15 14 30 30 H 1.00894 * 111.00299 * 145.84122 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5055 -4.9071 0.0011 12 6 2.5304 -6.0429 0.0005 13 1 3.0894 -6.0556 0.9361 14 6 1.8359 -7.4061 -0.2442 15 6 2.9748 -8.2751 -0.8251 16 6 4.0003 -7.2721 -1.3852 17 7 3.4510 -5.9177 -1.1584 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.8406 -3.5486 -0.7809 22 1 0.8803 -4.9817 -0.8887 23 1 0.8809 -4.9812 0.8913 24 1 1.0244 -7.3018 -0.9645 25 1 1.4697 -7.8261 0.6927 26 1 2.5946 -8.9129 -1.6232 27 1 3.4274 -8.8801 -0.0395 28 1 4.9499 -7.3802 -0.8609 29 1 4.1436 -7.4441 -2.4519 30 1 4.1880 -5.2563 -0.9650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236191954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = -8.915318 kcal Electronic energy + Delta-G solvation = -11080.256371 eV Core-core repulsion = 9102.632086 eV Total energy + Delta-G solvation = -1977.624285 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.49146 -34.86977 -32.40051 -30.10613 -29.58630 -26.38844 -23.63312 -21.53103 -20.50075 -19.90774 -16.65895 -16.47184 -15.33469 -14.58955 -14.46699 -13.60575 -13.07586 -12.65265 -12.60064 -11.99094 -11.81535 -11.40046 -11.23498 -11.13027 -10.77135 -10.68149 -10.47703 -10.42810 -9.78583 -9.10743 -8.44515 -8.31533 -7.19358 -5.98618 -4.00201 3.34048 3.40828 3.46234 4.37944 4.47113 4.73613 4.85249 5.07018 5.26600 5.37303 5.50274 5.68107 5.76633 5.79263 5.94224 5.96209 6.09408 6.23625 6.38162 6.52480 7.02335 7.33400 7.50757 7.54277 7.84161 8.19143 8.49593 8.70700 9.09763 9.64500 11.12711 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.090257 B = 0.007369 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.150103 B = 3798.905564 C = 4022.415613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.074 3.926 12 C 0.073 3.927 13 H 0.053 0.947 14 C -0.120 4.120 15 C -0.131 4.131 16 C 0.041 3.959 17 N -0.670 5.670 18 H 0.260 0.740 19 H -0.014 1.014 20 H 0.026 0.974 21 H 0.332 0.668 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 -13.415 -1.144 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.323 5.323 11 C -0.057 4.057 12 C -0.037 4.037 13 H 0.071 0.929 14 C -0.159 4.159 15 C -0.169 4.169 16 C -0.089 4.089 17 N -0.300 5.300 18 H 0.070 0.930 19 H 0.004 0.996 20 H 0.044 0.956 21 H 0.149 0.851 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.718 -13.283 -0.987 14.130 hybrid contribution 0.664 0.793 -0.144 1.045 sum 5.383 -12.490 -1.131 13.647 Atomic orbital electron populations 1.69977 1.06092 1.26600 1.51199 1.25002 0.94877 0.99373 0.95445 0.86428 0.80048 0.83382 0.77462 1.19678 1.21098 1.21041 1.21240 0.93519 0.90312 1.49937 0.91978 1.19541 0.90687 0.87474 0.95670 1.60676 1.21339 1.01266 1.48996 1.21804 0.94503 0.89744 0.99652 1.22677 0.94231 0.94620 0.92199 0.92852 1.22523 0.97912 0.94620 1.00844 1.22384 0.96496 0.97796 1.00207 1.22592 0.95986 0.89524 1.00782 1.62941 1.20557 1.06724 1.39807 0.93018 0.99595 0.95600 0.85086 0.95731 0.91795 0.90794 0.91266 0.91354 0.91858 0.94609 0.90912 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.19 5.28 5.44 -4.98 -0.03 5.25 16 10 N -0.69 -15.51 6.49 -115.06 -0.75 -16.26 16 11 C 0.07 1.38 5.53 -3.82 -0.02 1.36 16 12 C 0.07 1.10 3.51 -65.79 -0.23 0.87 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.12 -1.51 6.50 -24.87 -0.16 -1.67 16 15 C -0.13 -1.41 6.93 -25.37 -0.18 -1.58 16 16 C 0.04 0.48 7.52 -2.75 -0.02 0.46 16 17 N -0.67 -9.78 6.60 -103.18 -0.68 -10.47 16 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 19 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.33 7.22 7.62 -39.29 -0.30 6.92 16 22 H 0.02 0.48 8.03 -51.93 -0.42 0.07 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 0.97 7.97 -51.92 -0.41 0.55 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.34 4.95 8.39 -39.30 -0.33 4.62 16 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -30.63 248.83 -7.83 -38.45 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.81 Total: 3.31 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.06 Total: -9.08 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.69 Total: -53.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.63 -7.83 -38.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.537 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds