Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99608 * 2 1 4 4 H 1.48504 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46962 * 299.99790 * 3 2 1 6 6 H 1.48497 * 109.47126 * 60.00134 * 3 2 1 7 7 C 1.37876 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99939 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47201 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.59832 * 66.55172 * 12 11 10 14 14 C 1.54933 * 110.67032 * 189.74085 * 12 11 10 15 15 C 1.54593 * 102.92591 * 155.84966 * 14 12 11 16 16 C 1.53997 * 105.13807 * 338.04317 * 15 14 12 17 17 N 1.47899 * 107.05889 * 358.77516 * 16 15 14 18 18 H 0.96998 * 120.00293 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47405 * 59.99358 * 9 7 2 20 20 H 1.09006 * 109.46845 * 299.99504 * 9 7 2 21 21 H 1.00900 * 111.00301 * 303.94788 * 10 9 7 22 22 H 1.09004 * 109.46379 * 59.99951 * 11 10 9 23 23 H 1.08995 * 109.46813 * 300.00454 * 11 10 9 24 24 H 1.09007 * 110.72333 * 37.48893 * 14 12 11 25 25 H 1.09004 * 110.72411 * 274.21087 * 14 12 11 26 26 H 1.09004 * 110.30922 * 219.12663 * 15 14 12 27 27 H 1.08998 * 110.30989 * 96.95784 * 15 14 12 28 28 H 1.09004 * 109.91456 * 118.12612 * 16 15 14 29 29 H 1.09001 * 109.91811 * 239.22178 * 16 15 14 30 30 H 1.00894 * 111.00299 * 145.84122 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5055 -4.9071 0.0011 12 6 2.5304 -6.0429 0.0005 13 1 3.0894 -6.0556 0.9361 14 6 1.8359 -7.4061 -0.2442 15 6 2.9748 -8.2751 -0.8251 16 6 4.0003 -7.2721 -1.3852 17 7 3.4510 -5.9177 -1.1584 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.8406 -3.5486 -0.7809 22 1 0.8803 -4.9817 -0.8887 23 1 0.8809 -4.9812 0.8913 24 1 1.0244 -7.3018 -0.9645 25 1 1.4697 -7.8261 0.6927 26 1 2.5946 -8.9129 -1.6232 27 1 3.4274 -8.8801 -0.0395 28 1 4.9499 -7.3802 -0.8609 29 1 4.1436 -7.4441 -2.4519 30 1 4.1880 -5.2563 -0.9650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236191954.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = -32.302984 kcal Electronic energy + Delta-G solvation = -11081.270536 eV Core-core repulsion = 9102.632086 eV Total energy + Delta-G solvation = -1978.638450 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.63568 -36.70036 -34.49915 -31.14773 -31.08462 -28.26439 -25.23950 -23.46001 -21.54447 -21.18836 -18.60995 -17.74905 -16.99405 -16.41625 -15.79774 -15.15901 -14.73209 -14.47873 -13.76538 -13.54136 -13.13525 -12.95306 -12.80665 -12.60774 -12.50585 -12.21553 -12.10117 -11.66032 -11.44546 -11.19899 -10.67580 -9.45034 -9.10240 -8.22951 -6.34694 1.41407 1.42471 1.56652 2.40365 3.10130 3.27308 3.53145 3.85944 3.96974 4.17555 4.29760 4.42325 4.67965 4.76394 4.77079 4.93026 5.00842 5.02780 5.11935 5.21564 5.26935 5.31525 5.61001 5.93408 6.01837 6.41299 6.45904 6.73028 6.89911 7.36500 8.89284 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.090257 B = 0.007369 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.150103 B = 3798.905564 C = 4022.415613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.686 5.686 11 C 0.074 3.926 12 C 0.078 3.922 13 H 0.055 0.945 14 C -0.118 4.118 15 C -0.125 4.125 16 C 0.038 3.962 17 N -0.687 5.687 18 H 0.266 0.734 19 H -0.044 1.044 20 H -0.001 1.001 21 H 0.337 0.663 22 H 0.013 0.987 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -13.917 -1.157 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.317 5.317 11 C -0.057 4.057 12 C -0.032 4.032 13 H 0.073 0.927 14 C -0.157 4.157 15 C -0.163 4.163 16 C -0.091 4.091 17 N -0.318 5.318 18 H 0.074 0.926 19 H -0.026 1.026 20 H 0.017 0.983 21 H 0.155 0.845 22 H 0.031 0.969 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.133 -13.819 -1.005 15.152 hybrid contribution 0.197 0.897 -0.152 0.931 sum 6.330 -12.922 -1.157 14.435 Atomic orbital electron populations 1.70106 1.07925 1.28013 1.51599 1.26019 0.95837 1.03599 0.94497 0.85215 0.78889 0.77954 0.77795 1.18546 1.20233 1.20255 1.21580 0.93834 0.91385 1.50559 0.91661 1.19213 0.90752 0.89218 0.92947 1.60567 1.20461 1.01493 1.49174 1.21894 0.95511 0.89371 0.98881 1.22546 0.93686 0.94321 0.92671 0.92746 1.22523 0.98191 0.93335 1.01646 1.22393 0.95361 0.97442 1.01059 1.22696 0.96804 0.88062 1.01508 1.62911 1.20923 1.08526 1.39394 0.92570 1.02588 0.98284 0.84518 0.96912 0.92137 0.91671 0.89662 0.90052 0.90034 0.93242 0.90315 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.98 45.14 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.65 9.32 25.60 0.24 -31.41 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.69 5.44 85.56 0.47 12.15 16 10 N -0.69 -31.28 6.49 -517.94 -3.36 -34.64 16 11 C 0.07 2.80 5.53 86.30 0.48 3.28 16 12 C 0.08 2.28 3.51 45.26 0.16 2.44 16 13 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.12 -2.74 6.50 31.80 0.21 -2.53 16 15 C -0.12 -2.31 6.93 31.47 0.22 -2.09 16 16 C 0.04 0.81 7.52 86.45 0.65 1.46 16 17 N -0.69 -19.24 6.60 -480.36 -3.17 -22.41 16 18 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 19 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 20 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 21 H 0.34 14.80 7.62 -89.69 -0.68 14.12 16 22 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.06 1.62 7.97 -2.38 -0.02 1.60 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.34 9.53 8.39 -89.70 -0.75 8.78 16 Total: -1.00 -65.53 248.83 -1.66 -67.19 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.32 Total: 16.83 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 2.88 Total: -16.33 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -6.24 Total: -114.86 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.53 -1.66 -67.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191954.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.886 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds