Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.44605 * 2 1 4 4 C 1.53034 * 109.46067 * 240.03221 * 2 1 3 5 5 C 1.53196 * 109.31217 * 178.60928 * 4 2 1 6 6 N 1.46922 * 108.77356 * 54.63834 * 5 4 2 7 7 C 1.36942 * 120.63458 * 126.41045 * 6 5 4 8 8 H 1.08001 * 120.00298 * 207.67418 * 7 6 5 9 9 C 1.38814 * 119.99510 * 27.67494 * 7 6 5 10 10 N 1.31612 * 120.00159 * 17.35496 * 9 7 6 11 11 Si 1.86799 * 119.99811 * 197.35789 * 9 7 6 12 12 H 1.48501 * 109.47462 * 89.99755 * 11 9 7 13 13 H 1.48502 * 109.47196 * 210.00073 * 11 9 7 14 14 H 1.48506 * 109.46936 * 329.99745 * 11 9 7 15 15 C 1.46929 * 118.73844 * 306.38908 * 6 5 4 16 16 C 1.53037 * 109.46059 * 119.95976 * 2 1 3 17 17 H 1.09004 * 109.49588 * 61.40693 * 16 2 1 18 18 N 1.46894 * 109.50211 * 301.33918 * 16 2 1 19 19 H 1.09008 * 109.47446 * 300.03546 * 1 2 3 20 20 H 1.08997 * 109.47440 * 60.03496 * 1 2 3 21 21 H 1.09007 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.49803 * 298.56121 * 4 2 1 23 23 H 1.09004 * 109.50129 * 58.63229 * 4 2 1 24 24 H 1.08998 * 109.58460 * 174.41855 * 5 4 2 25 25 H 1.08996 * 109.59298 * 294.84967 * 5 4 2 26 26 H 0.97003 * 119.99810 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.58608 * 293.82198 * 15 6 5 28 28 H 1.09000 * 109.58589 * 173.39445 * 15 6 5 29 29 H 1.00901 * 111.00468 * 179.97438 * 18 16 2 30 30 H 1.00900 * 110.99998 * 303.95084 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6884 -1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0001 8 1 5.0097 -2.9655 0.8284 9 6 5.8549 -2.4219 -1.0644 10 7 6.0605 -1.4200 -1.8928 11 14 6.7450 -4.0439 -1.3212 12 1 5.9282 -4.9240 -2.1950 13 1 8.0597 -3.7908 -1.9638 14 1 6.9550 -4.7065 -0.0089 15 6 3.5713 -0.6884 1.2643 16 6 2.0398 -0.7206 1.2501 17 1 1.6973 -1.7554 1.2387 18 7 1.5242 -0.0467 2.4492 19 1 -0.3634 0.5144 0.8897 20 1 -0.3634 0.5133 -0.8903 21 1 -0.3634 -1.0277 0.0005 22 1 1.6978 -1.7556 -1.2382 23 1 1.6567 -0.2211 -2.1398 24 1 3.9416 -1.2845 -2.0983 25 1 3.9143 0.3410 -1.3673 26 1 6.6740 -1.5241 -2.6369 27 1 3.9142 0.3411 1.3673 28 1 3.9417 -1.2843 2.0984 29 1 1.8469 -0.5046 3.2884 30 1 1.7751 0.9306 2.4509 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251538320.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = 6.250350 kcal Electronic energy + Delta-G solvation = -11837.546854 eV Core-core repulsion = 9860.580201 eV Total energy + Delta-G solvation = -1976.966652 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.13583 -34.19248 -32.32433 -30.98715 -28.07489 -26.57006 -23.88676 -21.69837 -20.79800 -19.15611 -16.68219 -15.32462 -14.83611 -14.24778 -13.71660 -13.55103 -13.24083 -12.82864 -12.25716 -11.77144 -11.41749 -11.40050 -10.95420 -10.83574 -10.49794 -10.19042 -10.07283 -9.87327 -9.58259 -9.48144 -8.58281 -8.22306 -6.63455 -5.78052 -3.21220 3.37832 3.44511 3.45699 4.49000 5.00472 5.30939 5.42294 5.56005 5.66791 5.79075 6.08347 6.10633 6.26944 6.32412 6.41380 6.57783 6.60206 6.73306 6.80576 6.94678 6.99727 7.40538 7.55768 7.68412 7.79790 7.83658 8.45251 9.21505 9.84861 10.41792 11.29614 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062892 B = 0.012214 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.104225 B = 2291.988035 C = 2495.613242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.057 0.943 4 C -0.137 4.137 5 C 0.169 3.831 6 N -0.589 5.589 7 C -0.254 4.254 8 H 0.065 0.935 9 C 0.002 3.998 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.118 3.882 16 C 0.076 3.924 17 H 0.075 0.925 18 N -0.845 5.845 19 H 0.058 0.942 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.016 0.984 26 H 0.254 0.746 27 H 0.012 0.988 28 H 0.049 0.951 29 H 0.334 0.666 30 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 2.127 3.639 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.176 4.176 5 C 0.044 3.956 6 N -0.312 5.312 7 C -0.383 4.383 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C -0.010 4.010 16 C -0.037 4.037 17 H 0.093 0.907 18 N -0.372 5.372 19 H 0.077 0.923 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.940 1.923 3.226 8.783 hybrid contribution 1.598 -0.597 0.010 1.706 sum -6.341 1.325 3.236 7.242 Atomic orbital electron populations 1.21725 0.95913 1.01033 1.00531 1.21000 0.94800 0.98754 0.94934 0.92503 1.22250 1.00317 0.99495 0.95563 1.20810 0.87668 0.97028 0.90142 1.43995 1.48295 1.39627 0.99332 1.19209 1.09911 1.02955 1.06274 0.91763 1.25040 0.97216 0.97492 0.99914 1.70044 1.37748 1.29010 1.17900 0.86279 0.78776 0.83657 0.78004 1.21378 1.21751 1.20447 1.21729 0.92544 0.96141 0.90594 1.22043 0.94723 0.97792 0.89097 0.90679 1.59082 1.66760 1.06680 1.04678 0.92283 0.94138 0.93552 0.92718 0.93179 0.89496 0.96631 0.93625 0.97006 0.93258 0.85466 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.02 37.15 0.34 -1.73 16 2 C -0.08 -1.35 2.34 -90.59 -0.21 -1.56 16 3 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 4 C -0.14 -2.72 5.36 -26.61 -0.14 -2.86 16 5 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 6 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.26 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.36 16 9 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.59 11.19 55.49 0.62 -25.97 16 11 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.12 2.53 6.09 -3.71 -0.02 2.51 16 16 C 0.08 1.37 2.86 -67.60 -0.19 1.18 16 17 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 18 N -0.84 -12.41 8.43 -4.57 -0.04 -12.45 16 19 H 0.06 0.87 7.57 -51.92 -0.39 0.48 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 29 H 0.33 4.43 9.04 -39.29 -0.36 4.08 16 30 H 0.33 4.55 8.98 -39.29 -0.35 4.20 16 LS Contribution 239.89 15.07 3.62 3.62 Total: -1.00 -29.30 239.89 -6.59 -35.89 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.76 Total: 3.25 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.48 Total: -5.61 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.07 Total: -54.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.30 -6.59 -35.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251538320.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.145 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds