Wall clock time and date at job start Mon Mar 30 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09012 * 109.44605 * 2 1 4 4 C 1.53034 * 109.46067 * 240.03221 * 2 1 3 5 5 C 1.53196 * 109.31217 * 178.60928 * 4 2 1 6 6 N 1.46922 * 108.77356 * 54.63834 * 5 4 2 7 7 C 1.36942 * 120.63458 * 126.41045 * 6 5 4 8 8 H 1.08001 * 120.00298 * 207.67418 * 7 6 5 9 9 C 1.38814 * 119.99510 * 27.67494 * 7 6 5 10 10 N 1.31612 * 120.00159 * 17.35496 * 9 7 6 11 11 Si 1.86799 * 119.99811 * 197.35789 * 9 7 6 12 12 H 1.48501 * 109.47462 * 89.99755 * 11 9 7 13 13 H 1.48502 * 109.47196 * 210.00073 * 11 9 7 14 14 H 1.48506 * 109.46936 * 329.99745 * 11 9 7 15 15 C 1.46929 * 118.73844 * 306.38908 * 6 5 4 16 16 C 1.53037 * 109.46059 * 119.95976 * 2 1 3 17 17 H 1.09004 * 109.49588 * 61.40693 * 16 2 1 18 18 N 1.46894 * 109.50211 * 301.33918 * 16 2 1 19 19 H 1.09008 * 109.47446 * 300.03546 * 1 2 3 20 20 H 1.08997 * 109.47440 * 60.03496 * 1 2 3 21 21 H 1.09007 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.49803 * 298.56121 * 4 2 1 23 23 H 1.09004 * 109.50129 * 58.63229 * 4 2 1 24 24 H 1.08998 * 109.58460 * 174.41855 * 5 4 2 25 25 H 1.08996 * 109.59298 * 294.84967 * 5 4 2 26 26 H 0.97003 * 119.99810 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.58608 * 293.82198 * 15 6 5 28 28 H 1.09000 * 109.58589 * 173.39445 * 15 6 5 29 29 H 1.00901 * 111.00468 * 179.97438 * 18 16 2 30 30 H 1.00900 * 110.99998 * 303.95084 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6884 -1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0001 8 1 5.0097 -2.9655 0.8284 9 6 5.8549 -2.4219 -1.0644 10 7 6.0605 -1.4200 -1.8928 11 14 6.7450 -4.0439 -1.3212 12 1 5.9282 -4.9240 -2.1950 13 1 8.0597 -3.7908 -1.9638 14 1 6.9550 -4.7065 -0.0089 15 6 3.5713 -0.6884 1.2643 16 6 2.0398 -0.7206 1.2501 17 1 1.6973 -1.7554 1.2387 18 7 1.5242 -0.0467 2.4492 19 1 -0.3634 0.5144 0.8897 20 1 -0.3634 0.5133 -0.8903 21 1 -0.3634 -1.0277 0.0005 22 1 1.6978 -1.7556 -1.2382 23 1 1.6567 -0.2211 -2.1398 24 1 3.9416 -1.2845 -2.0983 25 1 3.9143 0.3410 -1.3673 26 1 6.6740 -1.5241 -2.6369 27 1 3.9142 0.3411 1.3673 28 1 3.9417 -1.2843 2.0984 29 1 1.8469 -0.5046 3.2884 30 1 1.7751 0.9306 2.4509 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251538320.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:17 Heat of formation + Delta-G solvation = -14.057505 kcal Electronic energy + Delta-G solvation = -11838.427468 eV Core-core repulsion = 9860.580201 eV Total energy + Delta-G solvation = -1977.847267 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76871 -36.01981 -33.82378 -32.96877 -29.68172 -28.30348 -25.71389 -23.31585 -22.57548 -20.76527 -18.70473 -16.87308 -16.65982 -15.87526 -15.43347 -15.26157 -14.99882 -14.38103 -13.87353 -13.36907 -13.10107 -13.03314 -12.76248 -12.59851 -12.26380 -11.98439 -11.93731 -11.55725 -11.30152 -11.06918 -10.59174 -9.72116 -8.65472 -7.89795 -5.37409 1.44236 1.46075 1.54814 2.47940 3.22827 3.53817 3.87706 3.92547 4.11583 4.31958 4.48922 4.59661 4.72124 4.80703 4.96717 5.00721 5.08175 5.16625 5.30714 5.40790 5.50842 5.55625 5.62518 5.75707 6.23703 6.37287 6.68414 7.10625 7.81651 8.33392 9.14873 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062892 B = 0.012214 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.104225 B = 2291.988035 C = 2495.613242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 H 0.056 0.944 4 C -0.125 4.125 5 C 0.175 3.825 6 N -0.609 5.609 7 C -0.268 4.268 8 H 0.065 0.935 9 C -0.050 4.050 10 N -0.935 5.935 11 Si 0.969 3.031 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.268 1.268 15 C 0.116 3.884 16 C 0.093 3.907 17 H 0.063 0.937 18 N -0.831 5.831 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.053 0.947 25 H -0.006 1.006 26 H 0.251 0.749 27 H 0.008 0.992 28 H 0.047 0.953 29 H 0.345 0.655 30 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 1.954 4.415 9.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.164 4.164 5 C 0.049 3.951 6 N -0.333 5.333 7 C -0.398 4.398 8 H 0.082 0.918 9 C -0.246 4.246 10 N -0.581 5.581 11 Si 0.797 3.203 12 H -0.210 1.210 13 H -0.220 1.220 14 H -0.193 1.193 15 C -0.012 4.012 16 C -0.021 4.021 17 H 0.081 0.919 18 N -0.360 5.360 19 H 0.087 0.913 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.012 0.988 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.255 1.759 4.041 10.250 hybrid contribution 2.013 -0.494 -0.182 2.080 sum -7.242 1.265 3.859 8.303 Atomic orbital electron populations 1.21622 0.93312 1.01407 1.01816 1.20969 0.96806 0.98080 0.93394 0.92587 1.22086 0.96572 0.99890 0.97902 1.20637 0.90768 0.94791 0.88908 1.44263 1.48358 1.39668 1.00974 1.19535 1.10203 1.03731 1.06368 0.91770 1.25824 0.98352 1.00585 0.99818 1.70195 1.38614 1.30879 1.18390 0.85244 0.77256 0.79685 0.78135 1.21025 1.21978 1.19295 1.21936 0.95050 0.95403 0.88770 1.21719 0.91820 0.97676 0.90846 0.91857 1.59021 1.65895 1.07166 1.03887 0.91262 0.92645 0.93600 0.93245 0.91181 0.92897 0.98831 0.93999 0.97420 0.93426 0.84222 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.38 9.02 71.98 0.65 -2.73 16 2 C -0.07 -2.45 2.34 -10.77 -0.03 -2.48 16 3 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.13 -4.85 5.36 30.67 0.16 -4.69 16 5 C 0.17 8.71 5.31 86.36 0.46 9.17 16 6 N -0.61 -31.58 2.99 -699.09 -2.09 -33.67 16 7 C -0.27 -15.18 9.59 84.03 0.81 -14.37 16 8 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 9 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 10 N -0.93 -56.39 11.19 21.65 0.24 -56.15 16 11 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.12 4.91 6.09 86.36 0.53 5.43 16 16 C 0.09 3.18 2.86 44.99 0.13 3.31 16 17 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 18 N -0.83 -22.09 8.43 -168.36 -1.42 -23.51 16 19 H 0.07 1.77 7.57 -2.38 -0.02 1.75 16 20 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 24 H 0.05 2.98 6.04 -2.39 -0.01 2.97 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.05 1.98 7.93 -2.39 -0.02 1.97 16 29 H 0.35 8.20 9.04 -89.69 -0.81 7.39 16 30 H 0.34 8.34 8.98 -89.69 -0.81 7.54 16 Total: -1.00 -62.66 239.89 1.39 -61.28 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.50 Total: 13.31 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.12 Total: -8.81 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.27 Total: -113.32 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -62.66 1.39 -61.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251538320.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.220 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds