Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.45302 * 2 1 4 4 C 1.53047 * 109.45954 * 119.96114 * 2 1 3 5 5 C 1.52756 * 109.38367 * 181.26008 * 4 2 1 6 6 N 1.46916 * 109.01038 * 305.58793 * 5 4 2 7 7 C 1.36945 * 120.63337 * 233.58676 * 6 5 4 8 8 H 1.07996 * 120.00223 * 151.63201 * 7 6 5 9 9 C 1.38812 * 119.99791 * 331.63399 * 7 6 5 10 10 N 1.31621 * 119.99722 * 343.22075 * 9 7 6 11 11 Si 1.86797 * 120.00136 * 163.22109 * 9 7 6 12 12 H 1.48501 * 109.46972 * 60.00030 * 11 9 7 13 13 H 1.48503 * 109.47012 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47071 * 299.99984 * 11 9 7 15 15 C 1.46928 * 118.74193 * 53.31268 * 6 5 4 16 16 C 1.53037 * 109.46376 * 240.02582 * 2 1 3 17 17 H 1.09005 * 109.49265 * 58.67126 * 16 2 1 18 18 N 1.46895 * 109.50210 * 298.57016 * 16 2 1 19 19 H 1.08998 * 109.47597 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47583 * 299.97197 * 1 2 3 21 21 H 1.09006 * 109.46906 * 59.96897 * 1 2 3 22 22 H 1.08997 * 109.49446 * 301.34020 * 4 2 1 23 23 H 1.09000 * 109.49159 * 61.40020 * 4 2 1 24 24 H 1.09009 * 109.50538 * 185.70685 * 5 4 2 25 25 H 1.08998 * 109.43053 * 65.42678 * 5 4 2 26 26 H 0.97006 * 119.99968 * 180.02562 * 10 9 7 27 27 H 1.09003 * 109.58597 * 66.42554 * 15 6 5 28 28 H 1.08997 * 109.59089 * 186.85975 * 15 6 5 29 29 H 1.00902 * 111.00209 * 180.15755 * 18 16 2 30 30 H 1.00899 * 111.00234 * 304.11363 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5670 -0.6923 1.2644 6 7 4.0678 -1.2488 0.0003 7 6 4.9757 -2.2741 0.0004 8 1 5.0039 -2.9705 -0.8246 9 6 5.8596 -2.4183 1.0609 10 7 6.0618 -1.4162 1.8899 11 14 6.7622 -4.0344 1.3114 12 1 7.5879 -4.3311 0.1133 13 1 7.6398 -3.9314 2.5049 14 1 5.7760 -5.1257 1.5155 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6573 -0.2208 -2.1398 18 7 1.5789 -2.1156 -1.2340 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5134 0.8902 21 1 -0.3633 0.5143 -0.8898 22 1 1.6571 -0.2206 2.1398 23 1 1.6972 -1.7554 1.2387 24 1 3.9345 -1.2907 2.0981 25 1 3.9096 0.3369 1.3717 26 1 6.6798 -1.5168 2.6309 27 1 3.9144 0.3408 -1.3672 28 1 3.9417 -1.2847 -2.0982 29 1 1.9053 -2.6136 -2.0486 30 1 1.8658 -2.5816 -0.3863 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251538504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = 7.826496 kcal Electronic energy + Delta-G solvation = -12003.617691 eV Core-core repulsion = 10026.719385 eV Total energy + Delta-G solvation = -1976.898305 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.31587 -33.97188 -31.83515 -30.88295 -28.39833 -26.68336 -23.83881 -21.92323 -20.94584 -18.32451 -16.86435 -15.37499 -14.74622 -13.97658 -13.79619 -13.38010 -13.27568 -12.77135 -12.29082 -11.76134 -11.39123 -11.32535 -11.07069 -10.70920 -10.67839 -10.29549 -10.06203 -9.89813 -9.49297 -9.33044 -8.52047 -8.01564 -6.63436 -5.80102 -3.23950 3.36431 3.42433 3.43290 4.47456 5.30969 5.39268 5.44995 5.47666 5.61546 5.78305 6.07560 6.19167 6.23170 6.35835 6.49163 6.59146 6.61584 6.72509 6.81544 6.94893 7.00526 7.40079 7.66820 7.76373 7.87658 8.16107 8.43645 9.19723 9.83081 10.40396 11.27620 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062623 B = 0.013160 C = 0.012294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.010341 B = 2127.179954 C = 2276.978106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.168 3.832 6 N -0.590 5.590 7 C -0.257 4.257 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.901 5.901 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.112 3.888 16 C 0.078 3.922 17 H 0.063 0.937 18 N -0.838 5.838 19 H 0.062 0.938 20 H 0.039 0.961 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.015 0.985 26 H 0.254 0.746 27 H 0.016 0.984 28 H 0.050 0.950 29 H 0.328 0.672 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 0.973 -2.898 7.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 H 0.078 0.922 4 C -0.177 4.177 5 C 0.043 3.957 6 N -0.313 5.313 7 C -0.386 4.386 8 H 0.080 0.920 9 C -0.195 4.195 10 N -0.545 5.545 11 Si 0.733 3.267 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.210 1.210 15 C -0.017 4.017 16 C -0.036 4.036 17 H 0.082 0.918 18 N -0.368 5.368 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.929 1.293 -2.763 8.495 hybrid contribution 1.663 -0.930 0.190 1.915 sum -6.266 0.362 -2.573 6.783 Atomic orbital electron populations 1.21732 0.95990 1.01893 0.99631 1.21009 0.94744 0.98470 0.95492 0.92207 1.22183 1.00109 0.99666 0.95718 1.20714 0.87765 0.97136 0.90097 1.44012 1.48220 1.39705 0.99358 1.19110 1.10112 1.02839 1.06550 0.91962 1.25059 0.97121 0.97400 0.99917 1.70033 1.37401 1.29100 1.17974 0.86369 0.79327 0.83725 0.77316 1.20954 1.21626 1.20983 1.21744 0.92979 0.96692 0.90247 1.21851 0.94837 0.90015 0.96867 0.91848 1.59219 1.66124 1.03328 1.08100 0.91926 0.94159 0.93958 0.93412 0.92423 0.89654 0.96684 0.93569 0.96582 0.93169 0.86170 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.05 37.15 0.34 -1.72 16 2 C -0.08 -1.38 2.50 -90.58 -0.23 -1.61 16 3 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.69 5.03 -26.83 -0.13 -2.82 16 5 C 0.17 4.06 5.27 -3.94 -0.02 4.04 16 6 N -0.59 -14.65 2.58 -172.58 -0.45 -15.09 16 7 C -0.26 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 9 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 10 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 11 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.11 2.37 6.12 -3.71 -0.02 2.35 16 16 C 0.08 1.40 3.14 -67.59 -0.21 1.19 16 17 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 18 N -0.84 -14.56 8.52 -4.56 -0.04 -14.60 16 19 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 20 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 24 H 0.09 2.29 6.07 -51.92 -0.32 1.98 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.33 5.33 9.04 -39.29 -0.36 4.98 16 30 H 0.35 6.71 6.55 -39.29 -0.26 6.46 16 LS Contribution 235.72 15.07 3.55 3.55 Total: -1.00 -28.20 235.72 -6.43 -34.63 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.58 Total: 6.18 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.51 Total: -5.68 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.14 Total: -55.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.20 -6.43 -34.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251538504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.461 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds