Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49493 * 2 1 4 4 C 1.53194 * 109.50208 * 120.06239 * 2 1 3 5 5 N 1.46929 * 108.76945 * 65.31741 * 4 2 1 6 6 C 1.36936 * 120.63084 * 233.63072 * 5 4 2 7 7 H 1.07994 * 120.00381 * 151.83500 * 6 5 4 8 8 C 1.38819 * 119.99840 * 331.83552 * 6 5 4 9 9 N 1.31622 * 120.00098 * 343.07540 * 8 6 5 10 10 Si 1.86801 * 119.99956 * 163.07271 * 8 6 5 11 11 H 1.48504 * 109.46649 * 60.00412 * 10 8 6 12 12 H 1.48495 * 109.47000 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47241 * 300.00474 * 10 8 6 14 14 C 1.46921 * 118.73815 * 53.60977 * 5 4 2 15 15 C 1.53188 * 108.77922 * 306.38659 * 14 5 4 16 16 C 1.53039 * 109.49826 * 239.93679 * 2 1 3 17 17 H 1.09001 * 109.45910 * 181.38789 * 16 2 1 18 18 N 1.46901 * 109.45948 * 61.43283 * 16 2 1 19 19 H 1.09007 * 109.46876 * 299.99898 * 1 2 3 20 20 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47597 * 59.99892 * 1 2 3 22 22 H 1.08996 * 109.58535 * 185.10401 * 4 2 1 23 23 H 1.09003 * 109.58803 * 305.39326 * 4 2 1 24 24 H 0.96992 * 120.00058 * 179.97438 * 9 8 6 25 25 H 1.09003 * 109.59019 * 66.18238 * 14 5 4 26 26 H 1.09007 * 109.58433 * 186.60073 * 14 5 4 27 27 H 1.08997 * 109.50009 * 174.58750 * 15 14 5 28 28 H 1.08999 * 109.49611 * 294.68591 * 15 14 5 29 29 H 1.00893 * 111.00290 * 180.02562 * 18 16 2 30 30 H 1.00899 * 110.99954 * 303.95377 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9633 -2.7306 2.1948 7 1 0.3014 -3.5596 1.9923 8 6 1.1162 -2.2659 3.4939 9 7 2.1422 -1.5015 3.8030 10 14 -0.1343 -2.7252 4.8034 11 1 -0.1743 -4.2022 4.9531 12 1 0.2532 -2.1065 6.0965 13 1 -1.4760 -2.2319 4.4014 14 6 2.0141 -2.9039 -0.0300 15 6 1.5030 -2.1561 -1.2654 16 6 2.0408 -0.7227 -1.2486 17 1 3.1305 -0.7439 -1.2355 18 7 1.5798 -0.0117 -2.4485 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 -0.8899 22 1 3.1275 -0.6458 1.2981 23 1 1.6027 -0.2709 2.1392 24 1 2.2488 -1.1765 4.7106 25 1 3.0980 -3.0043 -0.0860 26 1 1.5555 -3.8918 0.0148 27 1 1.8480 -2.6633 -2.1664 28 1 0.4133 -2.1358 -1.2534 29 1 1.9038 -0.4697 -3.2871 30 1 0.5749 0.0786 -2.4516 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251684801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = 11.151890 kcal Electronic energy + Delta-G solvation = -12030.377369 eV Core-core repulsion = 10053.623263 eV Total energy + Delta-G solvation = -1976.754105 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.35390 -34.21353 -31.46528 -31.17299 -28.53856 -26.04083 -24.31253 -21.89888 -21.09595 -18.11695 -16.81202 -15.39755 -14.97795 -14.24365 -13.87066 -13.37591 -13.01007 -12.81232 -12.54372 -11.79300 -11.40932 -11.01691 -10.86466 -10.67898 -10.52302 -10.16331 -10.06858 -9.88711 -9.57343 -9.40317 -8.44805 -8.19853 -6.62143 -5.75731 -3.17921 3.39480 3.45393 3.46472 4.51873 5.02895 5.37306 5.45131 5.57842 5.62274 5.87448 6.03682 6.12307 6.29641 6.37150 6.50486 6.59904 6.72835 6.87368 6.92534 7.00210 7.15601 7.34727 7.59481 7.68574 7.78775 7.84815 8.48767 9.24884 9.88486 10.45867 11.32804 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.013198 C = 0.012709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.740051 B = 2121.096798 C = 2202.658536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 H 0.060 0.940 4 C 0.176 3.824 5 N -0.589 5.589 6 C -0.251 4.251 7 H 0.063 0.937 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.148 3.852 15 C -0.167 4.167 16 C 0.100 3.900 17 H 0.070 0.930 18 N -0.850 5.850 19 H 0.047 0.953 20 H 0.063 0.937 21 H 0.033 0.967 22 H 0.016 0.984 23 H 0.089 0.911 24 H 0.254 0.746 25 H 0.016 0.984 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.329 0.671 30 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 1.156 -8.186 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.078 0.922 4 C 0.049 3.951 5 N -0.312 5.312 6 C -0.381 4.381 7 H 0.081 0.919 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.021 3.979 15 C -0.209 4.209 16 C -0.011 4.011 17 H 0.088 0.912 18 N -0.378 5.378 19 H 0.066 0.934 20 H 0.082 0.918 21 H 0.052 0.948 22 H 0.034 0.966 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.562 1.843 -7.726 8.096 hybrid contribution -1.075 -1.141 0.487 1.641 sum -2.637 0.703 -7.240 7.737 Atomic orbital electron populations 1.21702 0.96006 1.01936 0.99384 1.21789 0.95970 0.98751 0.96284 0.92174 1.20829 0.96198 0.83681 0.94358 1.43998 1.65265 1.05830 1.16060 1.19113 1.17703 1.15481 0.85810 0.91929 1.25027 0.96996 1.00574 0.96955 1.70020 1.27381 1.38501 1.18813 0.86398 0.81407 0.78064 0.81075 1.20946 1.21640 1.21071 1.20818 0.96280 0.94119 0.86657 1.22873 1.01207 0.97770 0.99001 1.21386 0.98822 0.90956 0.89913 0.91205 1.59120 1.17142 1.57037 1.04450 0.93429 0.91803 0.94757 0.96557 0.89303 0.93603 0.96605 0.93081 0.93729 0.92116 0.85948 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.40 37.16 0.31 -2.19 16 2 C -0.11 -2.13 2.91 -90.50 -0.26 -2.39 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.18 4.26 4.70 -3.71 -0.02 4.24 16 5 N -0.59 -14.80 2.43 -172.32 -0.42 -15.22 16 6 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 7 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 10 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.15 3.17 6.52 -3.72 -0.02 3.15 16 15 C -0.17 -2.96 5.31 -26.58 -0.14 -3.10 16 16 C 0.10 1.77 2.98 -67.64 -0.20 1.56 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 18 N -0.85 -12.58 9.24 -4.60 -0.04 -12.62 16 19 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 20 H 0.06 1.30 5.97 -51.93 -0.31 0.99 16 21 H 0.03 0.55 6.60 -51.93 -0.34 0.21 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 1.07 7.93 -51.92 -0.41 0.66 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 29 H 0.33 4.19 9.04 -39.30 -0.36 3.83 16 30 H 0.33 4.73 7.08 -39.29 -0.28 4.45 16 LS Contribution 233.16 15.07 3.51 3.51 Total: -1.00 -28.81 233.16 -6.35 -35.16 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.43 Total: 3.96 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.57 Total: -5.79 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.16 Total: -53.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.81 -6.35 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251684801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.307 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds