Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49493 * 2 1 4 4 C 1.53194 * 109.50208 * 120.06239 * 2 1 3 5 5 N 1.46929 * 108.76945 * 65.31741 * 4 2 1 6 6 C 1.36936 * 120.63084 * 233.63072 * 5 4 2 7 7 H 1.07994 * 120.00381 * 151.83500 * 6 5 4 8 8 C 1.38819 * 119.99840 * 331.83552 * 6 5 4 9 9 N 1.31622 * 120.00098 * 343.07540 * 8 6 5 10 10 Si 1.86801 * 119.99956 * 163.07271 * 8 6 5 11 11 H 1.48504 * 109.46649 * 60.00412 * 10 8 6 12 12 H 1.48495 * 109.47000 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47241 * 300.00474 * 10 8 6 14 14 C 1.46921 * 118.73815 * 53.60977 * 5 4 2 15 15 C 1.53188 * 108.77922 * 306.38659 * 14 5 4 16 16 C 1.53039 * 109.49826 * 239.93679 * 2 1 3 17 17 H 1.09001 * 109.45910 * 181.38789 * 16 2 1 18 18 N 1.46901 * 109.45948 * 61.43283 * 16 2 1 19 19 H 1.09007 * 109.46876 * 299.99898 * 1 2 3 20 20 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47597 * 59.99892 * 1 2 3 22 22 H 1.08996 * 109.58535 * 185.10401 * 4 2 1 23 23 H 1.09003 * 109.58803 * 305.39326 * 4 2 1 24 24 H 0.96992 * 120.00058 * 179.97438 * 9 8 6 25 25 H 1.09003 * 109.59019 * 66.18238 * 14 5 4 26 26 H 1.09007 * 109.58433 * 186.60073 * 14 5 4 27 27 H 1.08997 * 109.50009 * 174.58750 * 15 14 5 28 28 H 1.08999 * 109.49611 * 294.68591 * 15 14 5 29 29 H 1.00893 * 111.00290 * 180.02562 * 18 16 2 30 30 H 1.00899 * 110.99954 * 303.95377 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9633 -2.7306 2.1948 7 1 0.3014 -3.5596 1.9923 8 6 1.1162 -2.2659 3.4939 9 7 2.1422 -1.5015 3.8030 10 14 -0.1343 -2.7252 4.8034 11 1 -0.1743 -4.2022 4.9531 12 1 0.2532 -2.1065 6.0965 13 1 -1.4760 -2.2319 4.4014 14 6 2.0141 -2.9039 -0.0300 15 6 1.5030 -2.1561 -1.2654 16 6 2.0408 -0.7227 -1.2486 17 1 3.1305 -0.7439 -1.2355 18 7 1.5798 -0.0117 -2.4485 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 -0.8899 22 1 3.1275 -0.6458 1.2981 23 1 1.6027 -0.2709 2.1392 24 1 2.2488 -1.1765 4.7106 25 1 3.0980 -3.0043 -0.0860 26 1 1.5555 -3.8918 0.0148 27 1 1.8480 -2.6633 -2.1664 28 1 0.4133 -2.1358 -1.2534 29 1 1.9038 -0.4697 -3.2871 30 1 0.5749 0.0786 -2.4516 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251684801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -8.600851 kcal Electronic energy + Delta-G solvation = -12031.233912 eV Core-core repulsion = 10053.623263 eV Total energy + Delta-G solvation = -1977.610649 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98517 -35.99783 -33.35669 -32.77274 -30.21925 -27.79229 -26.14236 -23.54933 -22.88687 -19.81411 -18.64867 -16.94264 -16.81708 -15.96954 -15.45054 -15.21485 -14.71718 -14.45717 -14.15585 -13.40732 -13.19842 -12.81063 -12.65263 -12.48956 -12.33610 -11.92450 -11.81966 -11.68463 -11.25825 -11.09875 -10.51852 -9.48785 -8.65638 -7.86575 -5.31727 1.45760 1.48279 1.54866 2.51248 3.27883 3.66876 3.81258 3.98910 4.07203 4.35244 4.45876 4.52578 4.74543 4.80221 4.97950 5.04174 5.10300 5.22990 5.33722 5.39117 5.46475 5.58992 5.68482 5.73710 6.31711 6.40768 6.72474 7.15740 7.87353 8.39696 9.19784 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063227 B = 0.013198 C = 0.012709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.740051 B = 2121.096798 C = 2202.658536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 H 0.063 0.937 4 C 0.183 3.817 5 N -0.604 5.604 6 C -0.260 4.260 7 H 0.065 0.935 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.141 3.859 15 C -0.153 4.153 16 C 0.110 3.890 17 H 0.061 0.939 18 N -0.842 5.842 19 H 0.033 0.967 20 H 0.048 0.952 21 H 0.067 0.933 22 H -0.011 1.011 23 H 0.054 0.946 24 H 0.249 0.751 25 H 0.010 0.990 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.347 0.653 30 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 1.017 -9.862 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.057 3.943 5 N -0.327 5.327 6 C -0.390 4.390 7 H 0.083 0.917 8 C -0.245 4.245 9 N -0.582 5.582 10 Si 0.792 3.208 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.015 3.985 15 C -0.194 4.194 16 C -0.002 4.002 17 H 0.079 0.921 18 N -0.372 5.372 19 H 0.052 0.948 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.007 0.993 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.591 1.691 -9.450 9.944 hybrid contribution -0.713 -1.120 0.961 1.639 sum -3.303 0.572 -8.489 9.127 Atomic orbital electron populations 1.21601 0.94897 1.01216 1.00362 1.21613 0.96755 0.98461 0.95283 0.91823 1.20602 0.94310 0.83980 0.95398 1.44215 1.65318 1.06447 1.16750 1.19441 1.17616 1.15306 0.86651 0.91749 1.25774 0.98661 1.01085 0.98996 1.70181 1.29160 1.40031 1.18855 0.85389 0.79192 0.77974 0.78208 1.20105 1.22107 1.20406 1.20999 0.96100 0.94476 0.86896 1.22728 1.01088 0.97455 0.98119 1.21136 0.98239 0.90803 0.90019 0.92090 1.58986 1.17791 1.56518 1.03951 0.94822 0.93272 0.91390 0.99318 0.92758 0.94159 0.97164 0.92996 0.90500 0.92016 0.83988 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.40 71.98 0.60 -3.82 16 2 C -0.10 -3.89 2.91 -10.72 -0.03 -3.92 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.18 9.09 4.70 86.36 0.41 9.50 16 5 N -0.60 -30.56 2.43 -699.09 -1.70 -32.26 16 6 C -0.26 -14.41 9.58 84.04 0.81 -13.61 16 7 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 8 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 9 N -0.94 -56.36 11.19 21.65 0.24 -56.12 16 10 Si 0.96 45.33 29.59 68.60 2.03 47.36 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.14 5.91 6.52 86.36 0.56 6.47 16 15 C -0.15 -4.98 5.31 30.69 0.16 -4.82 16 16 C 0.11 3.60 2.98 44.96 0.13 3.73 16 17 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 18 N -0.84 -21.72 9.24 -168.47 -1.56 -23.27 16 19 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 20 H 0.05 1.91 5.97 -2.38 -0.01 1.89 16 21 H 0.07 1.97 6.60 -2.39 -0.02 1.95 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H 0.05 3.05 6.06 -2.39 -0.01 3.04 16 24 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 26 H 0.05 2.12 7.93 -2.38 -0.02 2.10 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.03 6.33 -2.39 -0.02 2.02 16 29 H 0.35 7.29 9.04 -89.70 -0.81 6.48 16 30 H 0.34 8.18 7.08 -89.69 -0.64 7.54 16 Total: -1.00 -62.05 233.16 1.76 -60.28 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.31 Total: 12.88 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.06 Total: -8.87 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.01 Total: -111.65 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -62.05 1.76 -60.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251684801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.682 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds