Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50855 * 2 1 4 4 C 1.53060 * 109.48841 * 239.94534 * 2 1 3 5 5 N 1.46956 * 109.36347 * 181.62849 * 4 2 1 6 6 C 1.46901 * 110.99797 * 183.18653 * 5 4 2 7 7 C 1.46963 * 110.87544 * 59.32377 * 5 4 2 8 8 H 1.08999 * 109.48868 * 60.65099 * 7 5 4 9 9 C 1.50702 * 109.48431 * 180.70743 * 7 5 4 10 10 H 1.08007 * 120.00376 * 0.02562 * 9 7 5 11 11 C 1.37877 * 120.00010 * 180.02562 * 9 7 5 12 12 N 1.31509 * 120.00066 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00267 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46958 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47392 * 119.99763 * 13 11 9 16 16 H 1.48497 * 109.47007 * 239.99811 * 13 11 9 17 17 C 1.53048 * 109.36520 * 300.67282 * 7 5 4 18 18 N 1.46953 * 109.36327 * 58.40548 * 17 7 5 19 19 H 1.09001 * 109.46751 * 299.94824 * 1 2 3 20 20 H 1.09002 * 109.47040 * 59.94186 * 1 2 3 21 21 H 1.08994 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.48501 * 61.66215 * 4 2 1 23 23 H 1.08991 * 109.48920 * 301.60152 * 4 2 1 24 24 H 1.09002 * 109.47401 * 296.20425 * 6 5 4 25 25 H 1.09001 * 109.46874 * 176.20437 * 6 5 4 26 26 H 1.09004 * 109.46970 * 56.20571 * 6 5 4 27 27 H 0.97006 * 120.00769 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.48517 * 178.37399 * 17 7 5 29 29 H 1.09001 * 109.49143 * 298.43613 * 17 7 5 30 30 H 1.00906 * 111.00166 * 64.54440 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7552 -1.2266 6 6 4.0411 -1.3752 -2.4477 7 6 3.9999 -1.4491 -0.0274 8 1 3.6360 -2.4766 -0.0275 9 6 5.5069 -1.4492 -0.0275 10 1 6.0470 -0.9804 -0.8369 11 6 6.1963 -2.0477 1.0057 12 7 5.5389 -2.6180 1.9915 13 14 8.0644 -2.0471 1.0061 14 1 8.5594 -1.3455 -0.2055 15 1 8.5590 -1.3489 2.2197 16 1 8.5598 -3.4470 1.0039 17 6 3.4894 -0.7265 1.2214 18 7 2.0204 -0.6938 1.1991 19 1 -0.3633 0.5130 0.8905 20 1 -0.3633 0.5147 -0.8895 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7021 -0.1930 -2.1394 23 1 1.6544 -1.7417 -1.2628 24 1 3.7251 -2.4174 -2.4933 25 1 5.1299 -1.3258 -2.4360 26 1 3.6625 -0.8423 -3.3201 27 1 6.0238 -3.0395 2.7183 28 1 3.8279 -1.2562 2.1119 29 1 3.8756 0.2927 1.2353 30 1 1.6370 -1.6252 1.2601 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251786639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = 3.193019 kcal Electronic energy + Delta-G solvation = -11888.578472 eV Core-core repulsion = 9911.479244 eV Total energy + Delta-G solvation = -1977.099228 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.40940 -34.02541 -32.88838 -30.74925 -27.24720 -26.33775 -24.06517 -22.32007 -20.67789 -19.36034 -16.41295 -15.10605 -14.54386 -14.26224 -13.96895 -13.86055 -13.21650 -12.59250 -12.13876 -11.88024 -11.67259 -11.10629 -10.98482 -10.85068 -10.73746 -10.46506 -10.24362 -10.04740 -9.71432 -9.23866 -8.53642 -7.48509 -7.16257 -6.07390 -4.10299 3.27491 3.35554 3.39930 4.37428 4.90412 5.12280 5.27356 5.55305 5.74073 5.86220 5.96930 6.11022 6.13989 6.23141 6.35608 6.47678 6.63891 6.71363 6.81670 7.01763 7.24617 7.61873 7.75400 7.91563 8.10597 8.15634 8.38361 8.56622 8.95738 9.54034 11.00155 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058900 B = 0.013234 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.271616 B = 2115.316211 C = 2462.980490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.080 0.920 4 C 0.025 3.975 5 N -0.539 5.539 6 C 0.040 3.960 7 C 0.185 3.815 8 H -0.004 1.004 9 C -0.504 4.504 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.285 1.285 17 C 0.066 3.934 18 N -0.692 5.692 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.017 0.983 24 H 0.009 0.991 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.262 0.738 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 2.370 -3.910 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.106 4.106 5 N -0.264 5.264 6 C -0.109 4.109 7 C 0.077 3.923 8 H 0.014 0.986 9 C -0.543 4.543 10 H 0.083 0.917 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.727 3.273 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.063 4.063 18 N -0.320 5.320 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.035 0.965 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.596 3.330 -3.298 7.299 hybrid contribution 0.921 -1.651 -0.768 2.041 sum -4.675 1.679 -4.066 6.419 Atomic orbital electron populations 1.21778 0.95429 1.01321 1.01357 1.21561 0.93575 0.99013 0.88493 0.90222 1.22807 0.90555 0.98078 0.99144 1.62202 1.05178 1.55143 1.03862 1.22174 1.01765 0.95364 0.91570 1.19936 0.95658 0.90757 0.85950 0.98632 1.21133 0.90182 1.35581 1.07419 0.91746 1.24956 0.98758 0.95095 0.95403 1.69862 1.35259 1.37379 1.10768 0.86421 0.85245 0.77577 0.78078 1.19745 1.20881 1.21140 1.22308 0.82719 1.00361 1.00937 1.61049 1.11099 1.22279 1.37610 0.92102 0.92835 0.93312 0.92258 0.96493 0.97237 0.90570 0.93943 0.92836 0.87483 0.92654 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.45 37.16 0.35 -1.67 16 2 C 0.08 1.55 3.20 -67.65 -0.22 1.33 16 3 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 4 C 0.02 0.47 4.90 -3.76 -0.02 0.45 16 5 N -0.54 -12.16 4.78 -236.12 -1.13 -13.29 16 6 C 0.04 0.82 9.26 60.07 0.56 1.37 16 7 C 0.18 4.73 1.94 -68.80 -0.13 4.59 16 8 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 9 C -0.50 -13.86 7.93 -34.44 -0.27 -14.13 16 10 H 0.06 1.78 6.45 -52.48 -0.34 1.44 16 11 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 12 N -0.89 -25.21 11.35 55.43 0.63 -24.58 16 13 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.07 1.61 5.76 -3.77 -0.02 1.59 16 18 N -0.69 -14.38 6.56 -106.59 -0.70 -15.08 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 1.64 6.28 -51.93 -0.33 1.32 16 26 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.11 2.89 6.13 -51.93 -0.32 2.57 16 29 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.33 6.63 8.80 -39.29 -0.35 6.29 16 LS Contribution 238.65 15.07 3.60 3.60 Total: -1.00 -28.04 238.65 -7.16 -35.20 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.69 Total: 2.84 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 0.15 Total: -4.92 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -1.20 Total: -52.95 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.04 -7.16 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251786639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.394 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds