Wall clock time and date at job start Mon Mar 30 2020 02:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50855 * 2 1 4 4 C 1.53060 * 109.48841 * 239.94534 * 2 1 3 5 5 N 1.46956 * 109.36347 * 181.62849 * 4 2 1 6 6 C 1.46901 * 110.99797 * 183.18653 * 5 4 2 7 7 C 1.46963 * 110.87544 * 59.32377 * 5 4 2 8 8 H 1.08999 * 109.48868 * 60.65099 * 7 5 4 9 9 C 1.50702 * 109.48431 * 180.70743 * 7 5 4 10 10 H 1.08007 * 120.00376 * 0.02562 * 9 7 5 11 11 C 1.37877 * 120.00010 * 180.02562 * 9 7 5 12 12 N 1.31509 * 120.00066 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 120.00267 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46958 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47392 * 119.99763 * 13 11 9 16 16 H 1.48497 * 109.47007 * 239.99811 * 13 11 9 17 17 C 1.53048 * 109.36520 * 300.67282 * 7 5 4 18 18 N 1.46953 * 109.36327 * 58.40548 * 17 7 5 19 19 H 1.09001 * 109.46751 * 299.94824 * 1 2 3 20 20 H 1.09002 * 109.47040 * 59.94186 * 1 2 3 21 21 H 1.08994 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.48501 * 61.66215 * 4 2 1 23 23 H 1.08991 * 109.48920 * 301.60152 * 4 2 1 24 24 H 1.09002 * 109.47401 * 296.20425 * 6 5 4 25 25 H 1.09001 * 109.46874 * 176.20437 * 6 5 4 26 26 H 1.09004 * 109.46970 * 56.20571 * 6 5 4 27 27 H 0.97006 * 120.00769 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.48517 * 178.37399 * 17 7 5 29 29 H 1.09001 * 109.49143 * 298.43613 * 17 7 5 30 30 H 1.00906 * 111.00166 * 64.54440 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7226 -1.2489 5 7 3.5097 -0.7552 -1.2266 6 6 4.0411 -1.3752 -2.4477 7 6 3.9999 -1.4491 -0.0274 8 1 3.6360 -2.4766 -0.0275 9 6 5.5069 -1.4492 -0.0275 10 1 6.0470 -0.9804 -0.8369 11 6 6.1963 -2.0477 1.0057 12 7 5.5389 -2.6180 1.9915 13 14 8.0644 -2.0471 1.0061 14 1 8.5594 -1.3455 -0.2055 15 1 8.5590 -1.3489 2.2197 16 1 8.5598 -3.4470 1.0039 17 6 3.4894 -0.7265 1.2214 18 7 2.0204 -0.6938 1.1991 19 1 -0.3633 0.5130 0.8905 20 1 -0.3633 0.5147 -0.8895 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7021 -0.1930 -2.1394 23 1 1.6544 -1.7417 -1.2628 24 1 3.7251 -2.4174 -2.4933 25 1 5.1299 -1.3258 -2.4360 26 1 3.6625 -0.8423 -3.3201 27 1 6.0238 -3.0395 2.7183 28 1 3.8279 -1.2562 2.1119 29 1 3.8756 0.2927 1.2353 30 1 1.6370 -1.6252 1.2601 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251786639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:57 Heat of formation + Delta-G solvation = -18.022961 kcal Electronic energy + Delta-G solvation = -11889.498466 eV Core-core repulsion = 9911.479244 eV Total energy + Delta-G solvation = -1978.019222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.13687 -35.74213 -34.83835 -32.49935 -29.03839 -27.94290 -25.93110 -24.10296 -22.32038 -21.14258 -18.49429 -17.00891 -16.20283 -15.91744 -15.67217 -15.62436 -15.00425 -14.21408 -14.00154 -13.42151 -13.08648 -12.87605 -12.63490 -12.58210 -12.48336 -12.14969 -12.03325 -11.80840 -11.64062 -11.16939 -10.61772 -9.26156 -8.95955 -8.16788 -6.27368 1.39752 1.41916 1.53602 2.39520 3.10817 3.25073 3.56286 4.09364 4.26576 4.40524 4.52529 4.63048 4.65534 4.70588 4.83034 4.94188 4.98159 5.14844 5.23357 5.28319 5.32887 5.63828 5.67061 6.02253 6.23663 6.35216 6.59398 6.66861 6.86643 7.40779 8.89853 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058900 B = 0.013234 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.271616 B = 2115.316211 C = 2462.980490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.082 3.918 3 H 0.071 0.929 4 C 0.025 3.975 5 N -0.552 5.552 6 C 0.042 3.958 7 C 0.193 3.807 8 H -0.042 1.042 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.280 1.280 17 C 0.081 3.919 18 N -0.689 5.689 19 H 0.066 0.934 20 H 0.079 0.921 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.014 0.986 24 H 0.003 0.997 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.264 0.736 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 3.030 -4.825 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.090 0.910 4 C -0.105 4.105 5 N -0.277 5.277 6 C -0.106 4.106 7 C 0.084 3.916 8 H -0.025 1.025 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.206 1.206 17 C -0.049 4.049 18 N -0.317 5.317 19 H 0.085 0.915 20 H 0.098 0.902 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.032 0.968 24 H 0.022 0.978 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.218 3.997 -4.229 8.516 hybrid contribution 1.057 -1.846 -0.520 2.190 sum -5.161 2.151 -4.748 7.335 Atomic orbital electron populations 1.21697 0.91788 1.02248 1.03019 1.21718 0.96378 0.97858 0.86901 0.91038 1.22921 0.88309 0.98410 1.00880 1.62179 1.07535 1.54593 1.03348 1.22179 1.00884 0.95527 0.92028 1.19709 0.94905 0.89060 0.87926 1.02462 1.21390 0.91475 1.35904 1.07486 0.92341 1.25736 1.03210 0.94647 0.94985 1.69986 1.36890 1.37719 1.11176 0.85422 0.79837 0.77685 0.78190 1.19242 1.20375 1.20629 1.21901 0.85157 0.98501 0.99357 1.60992 1.08617 1.22621 1.39473 0.91493 0.90166 0.92740 0.89237 0.96821 0.97809 0.92228 0.90385 0.92702 0.90315 0.94217 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.45 71.98 0.68 -2.60 16 2 C 0.08 2.85 3.20 44.93 0.14 2.99 16 3 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.02 0.89 4.90 86.31 0.42 1.31 16 5 N -0.55 -24.52 4.78 -900.94 -4.30 -28.82 16 6 C 0.04 1.68 9.26 127.69 1.18 2.87 16 7 C 0.19 10.04 1.94 44.17 0.09 10.13 16 8 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 9 C -0.52 -29.27 7.93 25.60 0.20 -29.07 16 10 H 0.06 3.27 6.45 -2.91 -0.02 3.25 16 11 C 0.01 0.74 5.30 84.66 0.45 1.19 16 12 N -0.92 -52.80 11.35 21.45 0.24 -52.56 16 13 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 C 0.08 4.05 5.76 86.31 0.50 4.54 16 18 N -0.69 -28.38 6.56 -491.13 -3.22 -31.60 16 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.09 2.73 8.13 -2.39 -0.02 2.71 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.06 2.55 6.28 -2.39 -0.01 2.54 16 26 H 0.08 2.54 8.13 -2.38 -0.02 2.52 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.08 4.39 6.13 -2.39 -0.01 4.37 16 29 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.33 13.31 8.80 -89.69 -0.79 12.52 16 Total: -1.00 -60.29 238.65 -1.27 -61.57 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.32 Total: 14.19 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 3.66 Total: -8.64 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -7.28 Total: -112.98 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.29 -1.27 -61.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251786639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.543 kcal (2) G-P(sol) polarization free energy of solvation -60.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds