Wall clock time and date at job start Mon Mar 30 2020 02:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.51453 * 2 1 4 4 C 1.53056 * 109.49015 * 120.05677 * 2 1 3 5 5 N 1.46956 * 109.38342 * 61.57320 * 4 2 1 6 6 C 1.46899 * 111.00293 * 183.17592 * 5 4 2 7 7 C 1.46962 * 110.87987 * 59.31148 * 5 4 2 8 8 H 1.09001 * 109.48625 * 60.64585 * 7 5 4 9 9 C 1.50697 * 109.48856 * 180.69207 * 7 5 4 10 10 H 1.07997 * 120.00510 * 359.97438 * 9 7 5 11 11 C 1.37878 * 119.99825 * 180.02562 * 9 7 5 12 12 N 1.31517 * 120.00038 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99878 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47292 * 90.00171 * 13 11 9 15 15 H 1.48508 * 109.47261 * 210.00006 * 13 11 9 16 16 H 1.48497 * 109.47333 * 330.00142 * 13 11 9 17 17 C 1.53051 * 109.36359 * 300.68149 * 7 5 4 18 18 N 1.46956 * 109.36687 * 58.40092 * 17 7 5 19 19 H 1.09004 * 109.47309 * 299.94496 * 1 2 3 20 20 H 1.09002 * 109.47395 * 59.94550 * 1 2 3 21 21 H 1.09000 * 109.47353 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.48813 * 301.59597 * 4 2 1 23 23 H 1.09002 * 109.48870 * 181.55486 * 4 2 1 24 24 H 1.09006 * 109.46404 * 63.95364 * 6 5 4 25 25 H 1.08993 * 109.47426 * 183.95520 * 6 5 4 26 26 H 1.08998 * 109.47024 * 303.96064 * 6 5 4 27 27 H 0.97006 * 119.99930 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.48907 * 178.36861 * 17 7 5 29 29 H 1.09002 * 109.48601 * 298.40885 * 17 7 5 30 30 H 1.00899 * 111.00438 * 64.54446 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0406 -0.7227 1.2488 5 7 1.5812 -2.1184 1.2268 6 6 1.9886 -2.8261 2.4479 7 6 2.0715 -2.8123 0.0276 8 1 3.1615 -2.8119 0.0274 9 6 1.5691 -4.2330 0.0282 10 1 0.9481 -4.5860 0.8382 11 6 1.9031 -5.0827 -1.0050 12 7 2.6598 -4.6532 -1.9912 13 14 1.2810 -6.8441 -1.0040 14 1 -0.0267 -6.9076 -1.7049 15 1 2.2599 -7.7153 -1.7027 16 1 1.1151 -7.3097 0.3963 17 6 1.5605 -2.0900 -1.2212 18 7 2.0198 -0.6942 -1.1991 19 1 -0.3634 0.5130 0.8905 20 1 -0.3634 0.5147 -0.8895 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6544 -0.2268 2.1394 23 1 3.1303 -0.6986 1.2629 24 1 1.5004 -2.3726 3.3105 25 1 1.6974 -3.8739 2.3748 26 1 3.0701 -2.7568 2.5644 27 1 2.8945 -5.2509 -2.7183 28 1 1.9466 -2.5858 -2.1118 29 1 0.4708 -2.1144 -1.2351 30 1 3.0257 -0.6435 -1.2603 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251786644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:59 Heat of formation + Delta-G solvation = -12.866302 kcal Electronic energy + Delta-G solvation = -12040.213406 eV Core-core repulsion = 10062.417793 eV Total energy + Delta-G solvation = -1977.795612 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.26550 -35.60881 -34.81529 -32.10188 -29.12458 -27.75833 -26.56609 -24.01936 -22.72160 -20.01184 -18.47326 -17.29383 -16.64269 -15.94593 -15.59098 -15.25912 -15.09361 -14.07689 -13.80214 -13.52589 -13.12242 -12.86334 -12.58730 -12.54041 -12.46696 -12.10019 -11.98172 -11.72106 -11.52942 -11.08565 -10.59962 -9.23405 -8.90189 -8.15163 -6.25604 1.41597 1.42814 1.52512 2.40428 3.12508 3.28987 3.60372 4.21678 4.23374 4.34573 4.55647 4.65750 4.69273 4.77540 4.90039 4.99322 5.04989 5.18303 5.24489 5.30833 5.52860 5.65372 5.71559 6.05360 6.27309 6.38776 6.61658 6.69244 6.88847 7.42366 8.91024 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.051818 B = 0.014465 C = 0.012775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.225237 B = 1935.268668 C = 2191.270106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.082 3.918 3 H 0.100 0.900 4 C 0.022 3.978 5 N -0.541 5.541 6 C 0.038 3.962 7 C 0.193 3.807 8 H -0.045 1.045 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.962 3.038 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.080 3.920 18 N -0.691 5.691 19 H 0.071 0.929 20 H 0.054 0.946 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.011 0.989 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.004 0.996 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 6.195 4.842 8.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.118 0.882 4 C -0.108 4.108 5 N -0.266 5.266 6 C -0.110 4.110 7 C 0.085 3.915 8 H -0.028 1.028 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.050 4.050 18 N -0.319 5.319 19 H 0.090 0.910 20 H 0.073 0.927 21 H 0.061 0.939 22 H 0.108 0.892 23 H 0.029 0.971 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.851 6.381 4.243 8.176 hybrid contribution 1.514 -1.553 0.526 2.232 sum -1.337 4.828 4.769 6.917 Atomic orbital electron populations 1.21625 0.93749 1.01620 1.01394 1.21762 0.97023 0.97199 0.86832 0.88209 1.22913 0.96271 0.90620 1.00976 1.62162 1.59634 1.01753 1.03062 1.22229 0.96659 0.99896 0.92251 1.19688 0.90450 0.93292 0.88092 1.02779 1.21364 1.31528 0.95920 1.07386 0.92284 1.25724 0.95099 1.02680 0.95050 1.69993 1.37536 1.37112 1.11127 0.85495 0.78080 0.79431 0.78257 1.19999 1.20936 1.19392 1.21919 0.98549 0.85460 0.99023 1.60951 1.15568 1.15853 1.39531 0.90977 0.92708 0.93861 0.89203 0.97088 0.90511 0.92157 0.97758 0.92775 0.90802 0.93359 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.84 71.98 0.64 -3.48 16 2 C 0.08 2.79 3.70 44.92 0.17 2.96 16 3 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 4 C 0.02 0.79 5.04 86.31 0.44 1.22 16 5 N -0.54 -23.44 4.09 -900.95 -3.69 -27.13 16 6 C 0.04 1.50 9.41 127.69 1.20 2.70 16 7 C 0.19 9.94 1.94 44.17 0.09 10.03 16 8 H -0.05 -2.63 8.14 -2.39 -0.02 -2.65 16 9 C -0.52 -28.93 7.83 25.60 0.20 -28.73 16 10 H 0.06 3.25 6.49 -2.91 -0.02 3.23 16 11 C 0.01 0.75 5.30 84.65 0.45 1.20 16 12 N -0.92 -52.68 11.35 21.45 0.24 -52.44 16 13 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.08 3.95 5.38 86.31 0.46 4.42 16 18 N -0.69 -28.10 6.70 -491.12 -3.29 -31.39 16 19 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 20 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.04 1.69 5.94 -2.39 -0.01 1.67 16 22 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.06 2.59 6.04 -2.39 -0.01 2.58 16 26 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.07 4.09 6.13 -2.39 -0.01 4.08 16 29 H 0.05 2.46 6.35 -2.39 -0.02 2.45 16 30 H 0.33 13.16 8.89 -89.69 -0.80 12.37 16 Total: -1.00 -59.41 233.71 -0.75 -60.16 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.32 Total: 14.81 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.64 Total: -9.69 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -6.73 Total: -110.96 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -59.41 -0.75 -60.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251786644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.295 kcal (2) G-P(sol) polarization free energy of solvation -59.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds