Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00188 * 2 1 4 4 C 1.53036 * 109.52450 * 174.16346 * 3 2 1 5 5 C 1.53126 * 109.31045 * 59.15933 * 4 3 2 6 6 H 1.09003 * 109.48999 * 62.29024 * 5 4 3 7 7 N 1.46897 * 109.55470 * 182.47917 * 5 4 3 8 8 C 1.53115 * 109.16037 * 302.40480 * 5 4 3 9 9 H 1.09001 * 109.50204 * 297.63473 * 8 5 4 10 10 C 1.50692 * 109.50573 * 177.55495 * 8 5 4 11 11 H 1.08002 * 119.99796 * 335.29453 * 10 8 5 12 12 C 1.37877 * 120.00423 * 155.29129 * 10 8 5 13 13 N 1.31516 * 119.99616 * 355.16675 * 12 10 8 14 14 Si 1.86797 * 120.00330 * 175.16902 * 12 10 8 15 15 H 1.48497 * 109.47320 * 90.00105 * 14 12 10 16 16 H 1.48500 * 109.46845 * 209.99824 * 14 12 10 17 17 H 1.48503 * 109.47027 * 329.99464 * 14 12 10 18 18 C 1.46852 * 110.99990 * 235.79335 * 2 1 3 19 19 H 1.08999 * 109.46909 * 184.21248 * 1 2 3 20 20 H 1.09003 * 109.46496 * 304.20674 * 1 2 3 21 21 H 1.08997 * 109.47240 * 64.20759 * 1 2 3 22 22 H 1.08996 * 109.46672 * 294.17981 * 3 2 1 23 23 H 1.08996 * 109.45936 * 54.15941 * 3 2 1 24 24 H 1.09003 * 109.50393 * 179.12409 * 4 3 2 25 25 H 1.09000 * 109.50651 * 299.24014 * 4 3 2 26 26 H 1.00899 * 111.00486 * 299.70192 * 7 5 4 27 27 H 1.00902 * 111.00003 * 63.65452 * 7 5 4 28 28 H 0.97002 * 120.00137 * 5.19044 * 13 12 10 29 29 H 1.09003 * 109.46276 * 65.81819 * 18 2 1 30 30 H 1.09000 * 109.45148 * 305.84938 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1195 0.5366 -1.0140 6 1 3.8900 1.0355 -1.9555 7 7 5.5762 0.4474 -0.8466 8 6 3.5181 -0.8715 -1.0210 9 1 3.7814 -1.3843 -0.0959 10 6 4.0597 -1.6440 -2.1961 11 1 4.4195 -1.1184 -3.0683 12 6 4.0958 -3.0218 -2.1579 13 7 3.7472 -3.6585 -1.0612 14 14 4.6400 -3.9841 -3.6636 15 1 6.1095 -4.1919 -3.6138 16 1 3.9543 -5.3011 -3.6837 17 1 4.2886 -3.2243 -4.8902 18 6 1.9953 -0.7707 -1.1338 19 1 -0.3633 -1.0249 0.0755 20 1 -0.3632 0.5778 0.8499 21 1 -0.3633 0.4471 -0.9252 22 1 1.7325 1.8609 -0.9375 23 1 1.5637 1.9255 0.8331 24 1 3.9099 2.3512 0.1310 25 1 3.7815 0.8567 1.0905 26 1 5.9962 1.3648 -0.8388 27 1 5.8134 -0.0659 -0.0109 28 1 3.3934 -3.1643 -0.3051 29 1 1.7324 -0.2708 -2.0661 30 1 1.5634 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258539191.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -7.553648 kcal Electronic energy + Delta-G solvation = -11872.124485 eV Core-core repulsion = 9894.559247 eV Total energy + Delta-G solvation = -1977.565238 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.46417 -34.51119 -32.94180 -29.76470 -29.17758 -25.26464 -24.19327 -21.80780 -21.20477 -19.09303 -16.80270 -14.93764 -14.90230 -14.41539 -13.94554 -13.70048 -13.53850 -13.20666 -12.28503 -11.77345 -11.68508 -11.22201 -11.18670 -10.76762 -10.60779 -10.44195 -10.08686 -10.01672 -9.12398 -8.50443 -8.18317 -7.75154 -7.63563 -6.19316 -3.87375 3.52384 3.55337 3.71152 4.54223 4.67847 5.29287 5.41555 5.46919 5.64967 5.72009 5.76934 5.86362 6.01564 6.18432 6.19750 6.22458 6.48426 6.58494 6.66140 6.87358 7.29003 7.50688 7.72183 7.78423 8.05824 8.28544 8.43042 8.63948 9.05053 9.81513 11.19320 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.014712 C = 0.011987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.929538 B = 1902.721012 C = 2335.340388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.549 5.549 3 C 0.066 3.934 4 C -0.152 4.152 5 C 0.104 3.896 6 H 0.059 0.941 7 N -0.823 5.823 8 C 0.044 3.956 9 H 0.038 0.962 10 C -0.565 4.565 11 H 0.049 0.951 12 C 0.017 3.983 13 N -0.919 5.919 14 Si 1.069 2.931 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.291 1.291 18 C 0.065 3.935 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.016 0.984 22 H 0.024 0.976 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.317 0.683 27 H 0.334 0.666 28 H 0.270 0.730 29 H 0.017 0.983 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 8.274 1.696 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.274 5.274 3 C -0.063 4.063 4 C -0.192 4.192 5 C -0.008 4.008 6 H 0.078 0.922 7 N -0.349 5.349 8 C 0.025 3.975 9 H 0.056 0.944 10 C -0.604 4.604 11 H 0.067 0.933 12 C -0.186 4.186 13 N -0.556 5.556 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.214 1.214 17 H -0.217 1.217 18 C -0.063 4.063 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.035 0.965 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.427 6.096 0.857 6.617 hybrid contribution -0.865 2.580 0.723 2.815 sum -3.292 8.676 1.580 9.413 Atomic orbital electron populations 1.22297 0.88970 1.01684 0.99184 1.62108 1.06265 1.12807 1.46179 1.21880 0.95516 0.89931 0.98967 1.22562 0.95486 0.99587 1.01608 1.21548 0.86711 0.97942 0.94587 0.92232 1.58704 1.10147 1.20017 1.46045 1.18878 0.88846 0.90995 0.98825 0.94417 1.21749 1.43589 0.92970 1.02077 0.93291 1.25733 0.95543 0.95521 1.01851 1.70747 1.41219 1.39769 1.03883 0.83548 0.76432 0.75483 0.74695 1.21613 1.21397 1.21719 1.22577 0.99303 0.96242 0.88141 0.91683 0.92490 0.96516 0.95815 0.92212 0.93177 0.91902 0.87195 0.85338 0.91817 0.96439 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.59 60.06 0.58 1.03 16 2 N -0.55 -10.85 4.91 -242.96 -1.19 -12.04 16 3 C 0.07 1.15 5.46 -3.84 -0.02 1.13 16 4 C -0.15 -2.70 5.67 -26.65 -0.15 -2.85 16 5 C 0.10 2.19 2.72 -67.59 -0.18 2.01 16 6 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 7 N -0.82 -16.37 8.91 -4.56 -0.04 -16.41 16 8 C 0.04 1.09 1.62 -91.70 -0.15 0.95 16 9 H 0.04 1.04 6.67 -51.93 -0.35 0.70 16 10 C -0.56 -15.86 7.99 -34.44 -0.28 -16.13 16 11 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 12 C 0.02 0.48 5.45 -17.82 -0.10 0.39 16 13 N -0.92 -27.90 13.63 55.43 0.76 -27.14 16 14 Si 1.07 25.89 29.91 -169.99 -5.08 20.81 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.06 1.50 4.73 -3.83 -0.02 1.49 16 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 20 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.32 5.22 9.04 -39.29 -0.36 4.87 16 27 H 0.33 6.58 8.98 -39.29 -0.35 6.23 16 28 H 0.27 8.23 6.66 -40.82 -0.27 7.96 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.71 8.12 -51.93 -0.42 1.29 16 LS Contribution 242.38 15.07 3.65 3.65 Total: -1.00 -30.15 242.38 -6.98 -37.13 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.75 Total: 5.99 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.32 Total: -11.99 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.48 Total: -55.59 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.15 -6.98 -37.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539191.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.577 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds