Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00188 * 2 1 4 4 C 1.53036 * 109.52450 * 174.16346 * 3 2 1 5 5 C 1.53126 * 109.31045 * 59.15933 * 4 3 2 6 6 H 1.09003 * 109.48999 * 62.29024 * 5 4 3 7 7 N 1.46897 * 109.55470 * 182.47917 * 5 4 3 8 8 C 1.53115 * 109.16037 * 302.40480 * 5 4 3 9 9 H 1.09001 * 109.50204 * 297.63473 * 8 5 4 10 10 C 1.50692 * 109.50573 * 177.55495 * 8 5 4 11 11 H 1.08002 * 119.99796 * 335.29453 * 10 8 5 12 12 C 1.37877 * 120.00423 * 155.29129 * 10 8 5 13 13 N 1.31516 * 119.99616 * 355.16675 * 12 10 8 14 14 Si 1.86797 * 120.00330 * 175.16902 * 12 10 8 15 15 H 1.48497 * 109.47320 * 90.00105 * 14 12 10 16 16 H 1.48500 * 109.46845 * 209.99824 * 14 12 10 17 17 H 1.48503 * 109.47027 * 329.99464 * 14 12 10 18 18 C 1.46852 * 110.99990 * 235.79335 * 2 1 3 19 19 H 1.08999 * 109.46909 * 184.21248 * 1 2 3 20 20 H 1.09003 * 109.46496 * 304.20674 * 1 2 3 21 21 H 1.08997 * 109.47240 * 64.20759 * 1 2 3 22 22 H 1.08996 * 109.46672 * 294.17981 * 3 2 1 23 23 H 1.08996 * 109.45936 * 54.15941 * 3 2 1 24 24 H 1.09003 * 109.50393 * 179.12409 * 4 3 2 25 25 H 1.09000 * 109.50651 * 299.24014 * 4 3 2 26 26 H 1.00899 * 111.00486 * 299.70192 * 7 5 4 27 27 H 1.00902 * 111.00003 * 63.65452 * 7 5 4 28 28 H 0.97002 * 120.00137 * 5.19044 * 13 12 10 29 29 H 1.09003 * 109.46276 * 65.81819 * 18 2 1 30 30 H 1.09000 * 109.45148 * 305.84938 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1195 0.5366 -1.0140 6 1 3.8900 1.0355 -1.9555 7 7 5.5762 0.4474 -0.8466 8 6 3.5181 -0.8715 -1.0210 9 1 3.7814 -1.3843 -0.0959 10 6 4.0597 -1.6440 -2.1961 11 1 4.4195 -1.1184 -3.0683 12 6 4.0958 -3.0218 -2.1579 13 7 3.7472 -3.6585 -1.0612 14 14 4.6400 -3.9841 -3.6636 15 1 6.1095 -4.1919 -3.6138 16 1 3.9543 -5.3011 -3.6837 17 1 4.2886 -3.2243 -4.8902 18 6 1.9953 -0.7707 -1.1338 19 1 -0.3633 -1.0249 0.0755 20 1 -0.3632 0.5778 0.8499 21 1 -0.3633 0.4471 -0.9252 22 1 1.7325 1.8609 -0.9375 23 1 1.5637 1.9255 0.8331 24 1 3.9099 2.3512 0.1310 25 1 3.7815 0.8567 1.0905 26 1 5.9962 1.3648 -0.8388 27 1 5.8134 -0.0659 -0.0109 28 1 3.3934 -3.1643 -0.3051 29 1 1.7324 -0.2708 -2.0661 30 1 1.5634 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258539191.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -30.845971 kcal Electronic energy + Delta-G solvation = -11873.134516 eV Core-core repulsion = 9894.559247 eV Total energy + Delta-G solvation = -1978.575269 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10923 -36.16353 -34.95098 -31.35976 -30.95805 -26.97385 -26.01086 -23.59325 -22.84532 -20.79044 -18.86446 -16.57383 -16.51395 -16.03191 -15.65310 -15.52916 -15.32600 -14.78903 -13.77566 -13.42747 -13.29277 -13.12224 -12.75175 -12.54987 -12.33826 -12.01602 -11.94196 -11.86965 -10.99343 -10.57919 -10.35068 -9.32912 -9.20190 -8.47783 -6.15679 1.54940 1.63555 1.80745 2.62767 3.05342 3.34087 3.81943 3.99196 4.04582 4.21365 4.37979 4.47506 4.53201 4.67570 4.69021 4.79135 4.91363 4.93815 5.02869 5.13182 5.42863 5.62684 5.99020 6.22138 6.31420 6.35992 6.48677 6.76064 6.88115 7.60312 8.90762 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.043338 B = 0.014712 C = 0.011987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.929538 B = 1902.721012 C = 2335.340388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.563 5.563 3 C 0.063 3.937 4 C -0.142 4.142 5 C 0.108 3.892 6 H 0.050 0.950 7 N -0.836 5.836 8 C 0.042 3.958 9 H 0.005 0.995 10 C -0.570 4.570 11 H 0.036 0.964 12 C -0.034 4.034 13 N -0.944 5.944 14 Si 1.112 2.888 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.082 3.918 19 H 0.057 0.943 20 H 0.087 0.913 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.339 0.661 27 H 0.334 0.666 28 H 0.257 0.743 29 H 0.011 0.989 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 9.871 1.679 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.288 5.288 3 C -0.065 4.065 4 C -0.182 4.182 5 C -0.004 4.004 6 H 0.068 0.932 7 N -0.364 5.364 8 C 0.022 3.978 9 H 0.023 0.977 10 C -0.609 4.609 11 H 0.055 0.945 12 C -0.231 4.231 13 N -0.583 5.583 14 Si 0.936 3.064 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.047 4.047 19 H 0.076 0.924 20 H 0.106 0.894 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.629 7.735 0.847 8.213 hybrid contribution -0.812 2.151 0.752 2.420 sum -3.441 9.886 1.600 10.590 Atomic orbital electron populations 1.22372 0.86752 1.02065 1.00928 1.62019 1.08417 1.14225 1.44151 1.22025 0.95273 0.88657 1.00573 1.22442 0.95755 1.00663 0.99341 1.21337 0.87452 0.95775 0.95801 0.93212 1.58587 1.09791 1.21761 1.46301 1.18816 0.90261 0.92851 0.95869 0.97711 1.22029 1.42911 0.93390 1.02556 0.94543 1.27032 0.95428 0.97131 1.03486 1.70869 1.43262 1.39735 1.04405 0.82987 0.76616 0.74526 0.72315 1.20500 1.21236 1.20014 1.22113 0.98010 0.95253 0.89324 0.92382 0.89389 0.95709 0.95324 0.88927 0.89740 0.92546 0.84762 0.85346 0.93259 0.97111 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.59 127.69 1.22 2.05 16 2 N -0.56 -21.50 4.91 -922.60 -4.53 -26.03 16 3 C 0.06 2.00 5.46 86.33 0.47 2.47 16 4 C -0.14 -4.65 5.67 30.65 0.17 -4.48 16 5 C 0.11 4.45 2.72 45.00 0.12 4.58 16 6 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 7 N -0.84 -32.40 8.91 -168.34 -1.50 -33.90 16 8 C 0.04 2.10 1.62 -11.49 -0.02 2.08 16 9 H 0.00 0.27 6.67 -2.39 -0.02 0.25 16 10 C -0.57 -32.50 7.99 25.60 0.20 -32.30 16 11 H 0.04 2.13 7.81 -2.91 -0.02 2.10 16 12 C -0.03 -1.96 5.45 84.65 0.46 -1.50 16 13 N -0.94 -58.81 13.63 21.45 0.29 -58.52 16 14 Si 1.11 52.36 29.91 68.60 2.05 54.41 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 C 0.08 3.82 4.73 86.32 0.41 4.23 16 19 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 20 H 0.09 2.17 8.09 -2.39 -0.02 2.16 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 2.40 8.09 -2.39 -0.02 2.38 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.34 10.47 9.04 -89.69 -0.81 9.66 16 27 H 0.33 13.02 8.98 -89.69 -0.81 12.21 16 28 H 0.26 16.29 6.66 -92.71 -0.62 15.67 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 30 H 0.03 1.84 8.12 -2.39 -0.02 1.82 16 Total: -1.00 -65.47 242.38 -0.99 -66.45 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.35 Total: 20.45 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 3.05 Total: -22.87 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -5.74 Total: -118.45 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -65.47 -0.99 -66.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539191.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.606 kcal (2) G-P(sol) polarization free energy of solvation -65.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds