Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 111.00328 * 2 1 4 4 C 1.53032 * 109.52527 * 185.83771 * 3 2 1 5 5 C 1.53114 * 109.28141 * 300.82107 * 4 3 2 6 6 H 1.08999 * 109.52512 * 177.61900 * 5 4 3 7 7 N 1.46905 * 109.52467 * 297.74934 * 5 4 3 8 8 C 1.53123 * 109.16198 * 57.65126 * 5 4 3 9 9 H 1.09011 * 109.49940 * 62.28508 * 8 5 4 10 10 C 1.50701 * 109.50632 * 182.40528 * 8 5 4 11 11 H 1.07994 * 119.99869 * 359.80505 * 10 8 5 12 12 C 1.37879 * 119.99566 * 179.80372 * 10 8 5 13 13 N 1.31505 * 120.00388 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99307 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47144 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46589 * 120.00385 * 14 12 10 17 17 H 1.48500 * 109.46875 * 239.99777 * 14 12 10 18 18 C 1.46846 * 110.99942 * 124.21154 * 2 1 3 19 19 H 1.09005 * 109.47069 * 295.79201 * 1 2 3 20 20 H 1.09002 * 109.46841 * 55.78558 * 1 2 3 21 21 H 1.08997 * 109.47281 * 175.79311 * 1 2 3 22 22 H 1.09000 * 109.46271 * 305.85568 * 3 2 1 23 23 H 1.09008 * 109.46154 * 65.83367 * 3 2 1 24 24 H 1.09000 * 109.50025 * 60.76400 * 4 3 2 25 25 H 1.08996 * 109.50621 * 180.87820 * 4 3 2 26 26 H 1.00892 * 110.99759 * 299.99914 * 7 5 4 27 27 H 1.00903 * 110.99982 * 63.95130 * 7 5 4 28 28 H 0.97003 * 120.00249 * 179.97438 * 13 12 10 29 29 H 1.09008 * 109.46456 * 294.17536 * 18 2 1 30 30 H 1.09003 * 109.46474 * 54.14041 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1189 0.5369 1.0144 6 1 5.1999 0.4722 0.8911 7 7 3.8088 1.2087 2.2835 8 6 3.5181 -0.8716 1.0209 9 1 3.7813 -1.3837 0.0953 10 6 4.0598 -1.6442 2.1960 11 1 4.7646 -1.1792 2.8693 12 6 3.6554 -2.9446 2.4113 13 7 2.7975 -3.5109 1.5912 14 14 4.3274 -3.9025 3.8675 15 1 5.2697 -3.0458 4.6312 16 1 3.2057 -4.3128 4.7501 17 1 5.0401 -5.1102 3.3791 18 6 1.9953 -0.7708 1.1337 19 1 -0.3633 0.4472 0.9253 20 1 -0.3633 0.5779 -0.8498 21 1 -0.3634 -1.0249 -0.0754 22 1 1.5635 1.9257 -0.8330 23 1 1.7327 1.8607 0.9377 24 1 3.7814 0.8567 -1.0906 25 1 3.9100 2.3511 -0.1310 26 1 4.1906 2.1424 2.3010 27 1 2.8140 1.2216 2.4522 28 1 2.5133 -4.4259 1.7425 29 1 1.7325 -0.2709 2.0661 30 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258539195.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = 0.220253 kcal Electronic energy + Delta-G solvation = -11994.755205 eV Core-core repulsion = 10017.527069 eV Total energy + Delta-G solvation = -1977.228137 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.53468 -34.07929 -32.79154 -29.60464 -28.91447 -25.63130 -24.63713 -21.75810 -21.28166 -17.94557 -16.25589 -15.54277 -14.40225 -14.30180 -14.22218 -13.98785 -13.23749 -12.85350 -12.07443 -11.81279 -11.76821 -11.06352 -10.90568 -10.75656 -10.65560 -10.40193 -10.05074 -9.75812 -9.03749 -8.75186 -8.27434 -7.75012 -7.39680 -5.87935 -3.89956 3.37454 3.45405 3.51809 4.53508 4.78328 5.40812 5.48203 5.56440 5.63993 5.77236 5.89707 6.02421 6.13595 6.33380 6.35948 6.52938 6.59874 6.75845 6.94344 7.08398 7.62315 7.85046 7.98211 8.06009 8.09950 8.25502 8.30150 8.64361 9.17162 9.73045 11.18789 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048072 B = 0.014920 C = 0.012461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.323420 B = 1876.211668 C = 2246.527132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.152 4.152 5 C 0.095 3.905 6 H 0.066 0.934 7 N -0.827 5.827 8 C 0.060 3.940 9 H 0.036 0.964 10 C -0.487 4.487 11 H 0.066 0.934 12 C 0.053 3.947 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.287 1.287 18 C 0.060 3.940 19 H 0.013 0.987 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.017 0.983 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.316 0.684 27 H 0.332 0.668 28 H 0.257 0.743 29 H 0.009 0.991 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 7.711 -2.011 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.069 4.069 4 C -0.192 4.192 5 C -0.017 4.017 6 H 0.084 0.916 7 N -0.356 5.356 8 C 0.041 3.959 9 H 0.054 0.946 10 C -0.526 4.526 11 H 0.085 0.915 12 C -0.147 4.147 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.213 1.213 18 C -0.066 4.066 19 H 0.031 0.969 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.126 0.874 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.710 6.713 -2.106 7.241 hybrid contribution -0.628 0.546 0.887 1.216 sum -2.338 7.259 -1.219 7.723 Atomic orbital electron populations 1.22261 0.89258 1.01641 0.98687 1.62104 1.05993 1.12012 1.47041 1.21957 0.95811 0.90625 0.98459 1.22436 0.95124 0.99456 1.02138 1.21654 0.98887 0.96179 0.84974 0.91558 1.58871 1.18981 1.21535 1.36181 1.18743 0.90070 0.89106 0.97945 0.94613 1.21221 1.24865 0.96150 1.10319 0.91546 1.25026 0.95472 0.97763 0.96409 1.69885 1.33179 1.13530 1.37151 0.86545 0.78760 0.79806 0.82928 1.19792 1.21404 1.21349 1.22499 0.99236 0.98290 0.86612 0.96876 0.92923 0.91588 0.92515 0.96451 0.91289 0.93352 0.87379 0.85413 0.93311 0.97277 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.59 60.07 0.58 1.11 16 2 N -0.55 -11.22 4.91 -242.95 -1.19 -12.42 16 3 C 0.06 1.07 5.23 -3.84 -0.02 1.05 16 4 C -0.15 -2.70 5.76 -26.66 -0.15 -2.85 16 5 C 0.09 1.97 3.14 -67.59 -0.21 1.76 16 6 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 7 N -0.83 -16.06 8.58 -4.56 -0.04 -16.10 16 8 C 0.06 1.52 2.09 -91.69 -0.19 1.33 16 9 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 10 C -0.49 -13.47 8.16 -34.44 -0.28 -13.76 16 11 H 0.07 1.88 7.60 -52.49 -0.40 1.48 16 12 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 13 N -0.90 -25.91 11.33 55.43 0.63 -25.28 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.06 1.44 4.28 -3.84 -0.02 1.42 16 19 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 20 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 23 H 0.02 0.30 6.84 -51.92 -0.35 -0.05 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.32 5.13 9.04 -39.30 -0.36 4.78 16 27 H 0.33 6.51 5.60 -39.29 -0.22 6.29 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.01 0.22 6.64 -51.92 -0.34 -0.12 16 30 H 0.11 2.88 6.08 -51.93 -0.32 2.57 16 LS Contribution 234.37 15.07 3.53 3.53 Total: -1.00 -28.69 234.37 -6.99 -35.68 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.50 Total: 6.33 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.39 Total: -8.56 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.60 Total: -53.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.69 -6.99 -35.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539195.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.896 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds