Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 111.00328 * 2 1 4 4 C 1.53032 * 109.52527 * 185.83771 * 3 2 1 5 5 C 1.53114 * 109.28141 * 300.82107 * 4 3 2 6 6 H 1.08999 * 109.52512 * 177.61900 * 5 4 3 7 7 N 1.46905 * 109.52467 * 297.74934 * 5 4 3 8 8 C 1.53123 * 109.16198 * 57.65126 * 5 4 3 9 9 H 1.09011 * 109.49940 * 62.28508 * 8 5 4 10 10 C 1.50701 * 109.50632 * 182.40528 * 8 5 4 11 11 H 1.07994 * 119.99869 * 359.80505 * 10 8 5 12 12 C 1.37879 * 119.99566 * 179.80372 * 10 8 5 13 13 N 1.31505 * 120.00388 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99307 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47144 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46589 * 120.00385 * 14 12 10 17 17 H 1.48500 * 109.46875 * 239.99777 * 14 12 10 18 18 C 1.46846 * 110.99942 * 124.21154 * 2 1 3 19 19 H 1.09005 * 109.47069 * 295.79201 * 1 2 3 20 20 H 1.09002 * 109.46841 * 55.78558 * 1 2 3 21 21 H 1.08997 * 109.47281 * 175.79311 * 1 2 3 22 22 H 1.09000 * 109.46271 * 305.85568 * 3 2 1 23 23 H 1.09008 * 109.46154 * 65.83367 * 3 2 1 24 24 H 1.09000 * 109.50025 * 60.76400 * 4 3 2 25 25 H 1.08996 * 109.50621 * 180.87820 * 4 3 2 26 26 H 1.00892 * 110.99759 * 299.99914 * 7 5 4 27 27 H 1.00903 * 110.99982 * 63.95130 * 7 5 4 28 28 H 0.97003 * 120.00249 * 179.97438 * 13 12 10 29 29 H 1.09008 * 109.46456 * 294.17536 * 18 2 1 30 30 H 1.09003 * 109.46474 * 54.14041 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1189 0.5369 1.0144 6 1 5.1999 0.4722 0.8911 7 7 3.8088 1.2087 2.2835 8 6 3.5181 -0.8716 1.0209 9 1 3.7813 -1.3837 0.0953 10 6 4.0598 -1.6442 2.1960 11 1 4.7646 -1.1792 2.8693 12 6 3.6554 -2.9446 2.4113 13 7 2.7975 -3.5109 1.5912 14 14 4.3274 -3.9025 3.8675 15 1 5.2697 -3.0458 4.6312 16 1 3.2057 -4.3128 4.7501 17 1 5.0401 -5.1102 3.3791 18 6 1.9953 -0.7708 1.1337 19 1 -0.3633 0.4472 0.9253 20 1 -0.3633 0.5779 -0.8498 21 1 -0.3634 -1.0249 -0.0754 22 1 1.5635 1.9257 -0.8330 23 1 1.7327 1.8607 0.9377 24 1 3.7814 0.8567 -1.0906 25 1 3.9100 2.3511 -0.1310 26 1 4.1906 2.1424 2.3010 27 1 2.8140 1.2216 2.4522 28 1 2.5133 -4.4259 1.7425 29 1 1.7325 -0.2709 2.0661 30 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258539195.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -21.505958 kcal Electronic energy + Delta-G solvation = -11995.697325 eV Core-core repulsion = 10017.527069 eV Total energy + Delta-G solvation = -1978.170256 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18468 -35.72794 -34.78393 -31.35000 -30.57993 -27.32283 -26.46977 -23.47286 -22.95578 -19.65660 -18.30317 -17.27537 -16.36250 -15.88854 -15.78663 -15.56185 -14.85624 -14.50934 -13.96949 -13.53491 -13.24911 -12.88153 -12.61479 -12.48681 -12.24235 -12.15412 -12.01054 -11.63356 -10.91898 -10.68463 -10.40362 -9.29971 -8.99684 -8.01283 -6.10731 1.41942 1.44275 1.56598 2.48975 3.14981 3.38088 3.96078 4.10090 4.14792 4.32327 4.49727 4.59837 4.70179 4.77292 4.87770 4.96833 4.99537 5.16232 5.23520 5.29108 5.65008 5.86498 6.06535 6.26772 6.43805 6.48797 6.65642 6.88702 7.01287 7.55694 9.03658 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.048072 B = 0.014920 C = 0.012461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.323420 B = 1876.211668 C = 2246.527132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.564 5.564 3 C 0.059 3.941 4 C -0.143 4.143 5 C 0.099 3.901 6 H 0.057 0.943 7 N -0.834 5.834 8 C 0.057 3.943 9 H -0.005 1.005 10 C -0.500 4.500 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.923 5.923 14 Si 0.952 3.048 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.080 3.920 19 H 0.020 0.980 20 H 0.083 0.917 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.338 0.662 27 H 0.332 0.668 28 H 0.257 0.743 29 H 0.002 0.998 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 9.286 -1.889 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.289 5.289 3 C -0.068 4.068 4 C -0.183 4.183 5 C -0.012 4.012 6 H 0.076 0.924 7 N -0.364 5.364 8 C 0.038 3.962 9 H 0.013 0.987 10 C -0.539 4.539 11 H 0.075 0.925 12 C -0.192 4.192 13 N -0.564 5.564 14 Si 0.779 3.221 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.048 4.048 19 H 0.039 0.961 20 H 0.102 0.898 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.066 0.934 29 H 0.020 0.980 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.867 8.315 -1.989 8.751 hybrid contribution -0.577 0.081 0.817 1.003 sum -2.444 8.395 -1.172 8.822 Atomic orbital electron populations 1.22307 0.87334 1.01687 1.00419 1.61998 1.07917 1.13764 1.45227 1.22068 0.95570 0.89093 1.00117 1.22349 0.95322 1.00667 0.99990 1.21403 0.98217 0.94477 0.87131 0.92447 1.58718 1.19135 1.23081 1.35514 1.18642 0.91306 0.91307 0.94955 0.98664 1.21462 1.24726 0.96779 1.10912 0.92521 1.25748 0.95821 0.98795 0.98836 1.70031 1.34083 1.13678 1.38572 0.85592 0.78153 0.78422 0.79950 1.19454 1.21008 1.20983 1.22002 0.98161 0.96944 0.87646 0.96101 0.89797 0.92785 0.89577 0.95528 0.92162 0.89783 0.84953 0.85411 0.93391 0.98024 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 9.59 127.69 1.22 2.24 16 2 N -0.56 -22.49 4.91 -922.57 -4.53 -27.02 16 3 C 0.06 1.93 5.23 86.32 0.45 2.38 16 4 C -0.14 -4.74 5.76 30.64 0.18 -4.57 16 5 C 0.10 4.06 3.14 44.99 0.14 4.20 16 6 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 7 N -0.83 -30.95 8.58 -168.34 -1.44 -32.39 16 8 C 0.06 2.92 2.09 -11.49 -0.02 2.89 16 9 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 10 C -0.50 -28.14 8.16 25.60 0.21 -27.93 16 11 H 0.06 3.23 7.60 -2.91 -0.02 3.21 16 12 C 0.01 0.29 5.30 84.66 0.45 0.74 16 13 N -0.92 -54.62 11.33 21.45 0.24 -54.37 16 14 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 C 0.08 3.88 4.28 86.33 0.37 4.25 16 19 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 20 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 21 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 23 H 0.03 0.83 6.84 -2.38 -0.02 0.82 16 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.34 10.03 9.04 -89.70 -0.81 9.22 16 27 H 0.33 12.43 5.60 -89.69 -0.50 11.93 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.00 0.08 6.64 -2.38 -0.02 0.07 16 30 H 0.07 3.82 6.08 -2.39 -0.01 3.80 16 Total: -1.00 -62.14 234.37 -0.90 -63.03 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.19 Total: 19.23 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 3.00 Total: -15.80 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -5.73 Total: -113.79 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -62.14 -0.90 -63.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539195.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.528 kcal (2) G-P(sol) polarization free energy of solvation -62.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds