Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00051 * 2 1 4 4 C 1.53035 * 109.52300 * 174.15802 * 3 2 1 5 5 C 1.53123 * 109.27784 * 59.18244 * 4 3 2 6 6 H 1.09001 * 109.57466 * 182.41189 * 5 4 3 7 7 N 1.46896 * 109.52676 * 62.24872 * 5 4 3 8 8 C 1.53125 * 109.16012 * 302.34245 * 5 4 3 9 9 H 1.08997 * 109.50291 * 297.67619 * 8 5 4 10 10 C 1.50695 * 109.50624 * 177.59501 * 8 5 4 11 11 H 1.08001 * 120.00233 * 268.22848 * 10 8 5 12 12 C 1.37878 * 120.00194 * 88.22036 * 10 8 5 13 13 N 1.31520 * 119.99721 * 353.65622 * 12 10 8 14 14 Si 1.86796 * 120.00308 * 173.37302 * 12 10 8 15 15 H 1.48499 * 109.47111 * 60.00270 * 14 12 10 16 16 H 1.48495 * 109.47245 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47204 * 300.00597 * 14 12 10 18 18 C 1.46848 * 110.99420 * 235.74544 * 2 1 3 19 19 H 1.09001 * 109.47098 * 63.95459 * 1 2 3 20 20 H 1.09004 * 109.47578 * 183.95127 * 1 2 3 21 21 H 1.08996 * 109.47383 * 303.95517 * 1 2 3 22 22 H 1.08995 * 109.46217 * 54.14489 * 3 2 1 23 23 H 1.08995 * 109.45144 * 294.16986 * 3 2 1 24 24 H 1.09001 * 109.50579 * 299.24021 * 4 3 2 25 25 H 1.09000 * 109.50504 * 179.11584 * 4 3 2 26 26 H 1.00894 * 111.00282 * 60.31254 * 7 5 4 27 27 H 1.00893 * 111.00334 * 184.27586 * 7 5 4 28 28 H 0.97006 * 119.99476 * 354.28568 * 13 12 10 29 29 H 1.09005 * 109.42819 * 65.81330 * 18 2 1 30 30 H 1.08993 * 109.50262 * 305.83998 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 1 5.1999 0.4713 -0.8915 7 7 3.8088 1.2087 -2.2834 8 6 3.5181 -0.8716 -1.0208 9 1 3.7819 -1.3839 -0.0957 10 6 4.0597 -1.6442 -2.1959 11 1 3.5289 -1.6391 -3.1364 12 6 5.2330 -2.3574 -2.0703 13 7 5.9444 -2.2642 -0.9680 14 14 5.8082 -3.4620 -3.4625 15 1 6.0124 -2.6483 -4.6879 16 1 7.0871 -4.1134 -3.0815 17 1 4.7820 -4.5028 -3.7249 18 6 1.9951 -0.7717 -1.1332 19 1 -0.3633 0.4512 -0.9233 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8524 22 1 1.5634 1.9257 0.8329 23 1 1.7325 1.8606 -0.9376 24 1 3.7813 0.8567 1.0907 25 1 3.9099 2.3512 0.1310 26 1 4.1949 2.1406 -2.3030 27 1 4.1344 0.6657 -3.0690 28 1 5.6888 -1.6323 -0.2778 29 1 1.7318 -0.2721 -2.0655 30 1 1.5638 -1.7726 -1.1233 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258539198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -10.263668 kcal Electronic energy + Delta-G solvation = -11953.682185 eV Core-core repulsion = 9975.999431 eV Total energy + Delta-G solvation = -1977.682754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.39373 -34.41380 -32.59941 -29.81763 -29.05196 -25.35885 -24.42787 -21.78595 -21.30355 -18.27407 -16.66471 -15.01272 -14.83091 -14.25989 -14.09413 -13.80424 -13.68021 -12.34298 -12.22446 -12.08553 -11.63835 -11.49578 -11.00086 -10.78400 -10.61048 -10.18201 -10.13205 -9.53388 -9.44722 -8.48497 -8.25900 -7.87516 -7.39154 -6.34846 -4.06299 3.42174 3.44998 3.63242 4.50479 4.72404 5.33994 5.51945 5.62196 5.77381 5.81044 5.91103 6.09571 6.20168 6.31201 6.41877 6.46995 6.59420 6.76682 6.82330 6.97634 7.39132 7.48922 7.82371 7.87032 8.14913 8.34192 8.41631 8.51858 8.89637 9.66118 11.02766 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053991 B = 0.013360 C = 0.012283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.483118 B = 2095.227805 C = 2278.992273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.550 5.550 3 C 0.072 3.928 4 C -0.111 4.111 5 C 0.094 3.906 6 H 0.024 0.976 7 N -0.839 5.839 8 C 0.044 3.956 9 H 0.039 0.961 10 C -0.591 4.591 11 H 0.049 0.951 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 1.064 2.936 15 H -0.289 1.289 16 H -0.284 1.284 17 H -0.288 1.288 18 C 0.080 3.920 19 H 0.016 0.984 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.313 0.687 27 H 0.349 0.651 28 H 0.271 0.729 29 H 0.032 0.968 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 5.563 -0.021 7.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.057 4.057 4 C -0.150 4.150 5 C -0.018 4.018 6 H 0.042 0.958 7 N -0.369 5.369 8 C 0.024 3.976 9 H 0.057 0.943 10 C -0.630 4.630 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.546 5.546 14 Si 0.893 3.107 15 H -0.216 1.216 16 H -0.210 1.210 17 H -0.214 1.214 18 C -0.047 4.047 19 H 0.035 0.965 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.041 4.128 0.208 6.519 hybrid contribution -0.424 1.574 -0.447 1.691 sum -5.465 5.702 -0.240 7.902 Atomic orbital electron populations 1.22267 0.89233 1.01243 0.99244 1.62029 1.05942 1.13646 1.45803 1.21818 0.95339 0.89327 0.99170 1.21664 0.95080 0.98840 0.99373 1.21549 0.96415 0.96313 0.87536 0.95787 1.58817 1.67383 1.05187 1.05537 1.18882 0.89902 0.90845 0.97952 0.94326 1.21869 1.09933 1.33248 0.97963 0.93261 1.25802 0.93758 0.97890 1.00958 1.70777 1.40114 1.36178 1.07540 0.83621 0.76269 0.76238 0.74618 1.21592 1.20951 1.21447 1.22086 0.97799 0.95269 0.89557 0.96522 0.92077 0.92568 0.93063 0.94305 0.91931 0.93435 0.87736 0.83649 0.91773 0.94973 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.59 60.06 0.58 1.05 16 2 N -0.55 -10.94 4.91 -242.97 -1.19 -12.13 16 3 C 0.07 1.32 5.32 -3.84 -0.02 1.30 16 4 C -0.11 -2.15 5.77 -26.65 -0.15 -2.31 16 5 C 0.09 2.09 3.05 -67.59 -0.21 1.88 16 6 H 0.02 0.60 7.65 -51.93 -0.40 0.20 16 7 N -0.84 -16.92 7.91 -4.56 -0.04 -16.95 16 8 C 0.04 1.09 1.72 -91.69 -0.16 0.93 16 9 H 0.04 1.08 6.99 -51.93 -0.36 0.72 16 10 C -0.59 -16.05 7.04 -34.44 -0.24 -16.29 16 11 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 12 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 13 N -0.91 -27.10 13.55 55.43 0.75 -26.35 16 14 Si 1.06 24.80 29.91 -169.99 -5.08 19.72 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.08 1.81 4.59 -3.83 -0.02 1.79 16 19 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 22 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 23 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.31 5.48 9.04 -39.29 -0.36 5.12 16 27 H 0.35 7.50 7.80 -39.30 -0.31 7.19 16 28 H 0.27 8.08 6.35 -40.82 -0.26 7.82 16 29 H 0.03 0.75 7.69 -51.93 -0.40 0.35 16 30 H 0.05 1.25 8.12 -51.93 -0.42 0.82 16 LS Contribution 238.02 15.07 3.59 3.59 Total: -1.00 -28.89 238.02 -6.93 -35.82 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.64 Total: 7.47 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.32 Total: -11.16 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.48 Total: -55.43 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.89 -6.93 -35.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.558 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds