Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00051 * 2 1 4 4 C 1.53035 * 109.52300 * 174.15802 * 3 2 1 5 5 C 1.53123 * 109.27784 * 59.18244 * 4 3 2 6 6 H 1.09001 * 109.57466 * 182.41189 * 5 4 3 7 7 N 1.46896 * 109.52676 * 62.24872 * 5 4 3 8 8 C 1.53125 * 109.16012 * 302.34245 * 5 4 3 9 9 H 1.08997 * 109.50291 * 297.67619 * 8 5 4 10 10 C 1.50695 * 109.50624 * 177.59501 * 8 5 4 11 11 H 1.08001 * 120.00233 * 268.22848 * 10 8 5 12 12 C 1.37878 * 120.00194 * 88.22036 * 10 8 5 13 13 N 1.31520 * 119.99721 * 353.65622 * 12 10 8 14 14 Si 1.86796 * 120.00308 * 173.37302 * 12 10 8 15 15 H 1.48499 * 109.47111 * 60.00270 * 14 12 10 16 16 H 1.48495 * 109.47245 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47204 * 300.00597 * 14 12 10 18 18 C 1.46848 * 110.99420 * 235.74544 * 2 1 3 19 19 H 1.09001 * 109.47098 * 63.95459 * 1 2 3 20 20 H 1.09004 * 109.47578 * 183.95127 * 1 2 3 21 21 H 1.08996 * 109.47383 * 303.95517 * 1 2 3 22 22 H 1.08995 * 109.46217 * 54.14489 * 3 2 1 23 23 H 1.08995 * 109.45144 * 294.16986 * 3 2 1 24 24 H 1.09001 * 109.50579 * 299.24021 * 4 3 2 25 25 H 1.09000 * 109.50504 * 179.11584 * 4 3 2 26 26 H 1.00894 * 111.00282 * 60.31254 * 7 5 4 27 27 H 1.00893 * 111.00334 * 184.27586 * 7 5 4 28 28 H 0.97006 * 119.99476 * 354.28568 * 13 12 10 29 29 H 1.09005 * 109.42819 * 65.81330 * 18 2 1 30 30 H 1.08993 * 109.50262 * 305.83998 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 1 5.1999 0.4713 -0.8915 7 7 3.8088 1.2087 -2.2834 8 6 3.5181 -0.8716 -1.0208 9 1 3.7819 -1.3839 -0.0957 10 6 4.0597 -1.6442 -2.1959 11 1 3.5289 -1.6391 -3.1364 12 6 5.2330 -2.3574 -2.0703 13 7 5.9444 -2.2642 -0.9680 14 14 5.8082 -3.4620 -3.4625 15 1 6.0124 -2.6483 -4.6879 16 1 7.0871 -4.1134 -3.0815 17 1 4.7820 -4.5028 -3.7249 18 6 1.9951 -0.7717 -1.1332 19 1 -0.3633 0.4512 -0.9233 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8524 22 1 1.5634 1.9257 0.8329 23 1 1.7325 1.8606 -0.9376 24 1 3.7813 0.8567 1.0907 25 1 3.9099 2.3512 0.1310 26 1 4.1949 2.1406 -2.3030 27 1 4.1344 0.6657 -3.0690 28 1 5.6888 -1.6323 -0.2778 29 1 1.7318 -0.2721 -2.0655 30 1 1.5638 -1.7726 -1.1233 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258539198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -32.048674 kcal Electronic energy + Delta-G solvation = -11954.626853 eV Core-core repulsion = 9975.999431 eV Total energy + Delta-G solvation = -1978.627422 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.09408 -36.15893 -34.54224 -31.57093 -30.75656 -26.93095 -26.39021 -23.55999 -22.99526 -20.05303 -18.70320 -16.76433 -16.48449 -15.93219 -15.78369 -15.59987 -15.31735 -14.11731 -13.96632 -13.70093 -13.32278 -13.22352 -12.65893 -12.42280 -12.21127 -11.98609 -11.86481 -11.45841 -11.27557 -10.58109 -10.28602 -9.55031 -9.01168 -8.57451 -6.28488 1.53863 1.60813 1.79938 2.58220 3.14424 3.25963 3.86144 4.10260 4.19742 4.34857 4.49537 4.55504 4.68983 4.70965 4.84677 4.89159 4.97436 5.04028 5.13730 5.22739 5.47074 5.60817 6.00424 6.22959 6.32533 6.36115 6.46504 6.66701 6.86347 7.51536 8.80331 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053991 B = 0.013360 C = 0.012283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.483118 B = 2095.227805 C = 2278.992273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.565 5.565 3 C 0.075 3.925 4 C -0.108 4.108 5 C 0.101 3.899 6 H -0.011 1.011 7 N -0.829 5.829 8 C 0.039 3.961 9 H -0.001 1.001 10 C -0.593 4.593 11 H 0.047 0.953 12 C -0.030 4.030 13 N -0.939 5.939 14 Si 1.111 2.889 15 H -0.269 1.269 16 H -0.290 1.290 17 H -0.275 1.275 18 C 0.094 3.906 19 H 0.022 0.978 20 H 0.063 0.937 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.332 0.668 27 H 0.341 0.659 28 H 0.257 0.743 29 H 0.026 0.974 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.758 6.576 -0.547 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.290 5.290 3 C -0.053 4.053 4 C -0.146 4.146 5 C -0.011 4.011 6 H 0.007 0.993 7 N -0.359 5.359 8 C 0.020 3.980 9 H 0.017 0.983 10 C -0.632 4.632 11 H 0.065 0.935 12 C -0.228 4.228 13 N -0.577 5.577 14 Si 0.933 3.067 15 H -0.194 1.194 16 H -0.216 1.216 17 H -0.200 1.200 18 C -0.033 4.033 19 H 0.041 0.959 20 H 0.082 0.918 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.155 0.845 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.224 5.176 -0.316 8.101 hybrid contribution -0.122 1.300 -0.251 1.330 sum -6.346 6.477 -0.566 9.085 Atomic orbital electron populations 1.22349 0.86668 1.02166 1.00725 1.61973 1.08351 1.14409 1.44227 1.21858 0.94320 0.88692 1.00398 1.21628 0.96131 0.99623 0.97209 1.21307 0.94307 0.95668 0.89821 0.99265 1.58758 1.67118 1.05872 1.04137 1.18827 0.91970 0.91959 0.95246 0.98320 1.22143 1.09562 1.33054 0.98424 0.93501 1.27161 0.94195 0.99224 1.02252 1.70897 1.41245 1.37087 1.08432 0.83010 0.75792 0.75169 0.72697 1.19366 1.21579 1.20010 1.21757 0.95892 0.95217 0.90473 0.95893 0.91784 0.89880 0.89944 0.94365 0.92997 0.90643 0.85629 0.84539 0.93272 0.95549 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.59 127.69 1.22 2.08 16 2 N -0.56 -21.46 4.91 -922.60 -4.53 -25.99 16 3 C 0.08 2.56 5.32 86.33 0.46 3.02 16 4 C -0.11 -4.00 5.77 30.65 0.18 -3.82 16 5 C 0.10 4.52 3.05 45.00 0.14 4.66 16 6 H -0.01 -0.54 7.65 -2.39 -0.02 -0.56 16 7 N -0.83 -32.45 7.91 -168.34 -1.33 -33.78 16 8 C 0.04 2.01 1.72 -11.48 -0.02 1.99 16 9 H 0.00 -0.08 6.99 -2.39 -0.02 -0.10 16 10 C -0.59 -32.59 7.04 25.60 0.18 -32.41 16 11 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 12 C -0.03 -1.70 5.45 84.65 0.46 -1.24 16 13 N -0.94 -57.52 13.55 21.45 0.29 -57.23 16 14 Si 1.11 49.93 29.91 68.60 2.05 51.98 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.09 4.23 4.59 86.33 0.40 4.63 16 19 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 22 H 0.08 2.35 8.09 -2.39 -0.02 2.33 16 23 H 0.04 1.33 7.68 -2.39 -0.02 1.31 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.33 10.97 9.04 -89.70 -0.81 10.16 16 27 H 0.34 14.44 7.80 -89.70 -0.70 13.74 16 28 H 0.26 16.05 6.35 -92.70 -0.59 15.46 16 29 H 0.03 1.20 7.69 -2.38 -0.02 1.18 16 30 H 0.04 1.91 8.12 -2.39 -0.02 1.89 16 Total: -1.00 -62.51 238.02 -0.71 -63.22 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.21 Total: 22.90 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.02 Total: -21.10 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.57 Total: -117.00 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.05 Total: 51.98 kcal Total: -62.51 -0.71 -63.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258539198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.169 kcal (2) G-P(sol) polarization free energy of solvation -62.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds