Wall clock time and date at job start Mon Mar 30 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46844 * 110.99887 * 2 1 4 4 C 1.53045 * 109.52143 * 185.83959 * 3 2 1 5 5 C 1.53120 * 109.27382 * 300.82250 * 4 3 2 6 6 H 1.08999 * 109.52540 * 297.68138 * 5 4 3 7 7 C 1.50701 * 109.51844 * 177.56277 * 5 4 3 8 8 H 1.08000 * 119.99730 * 239.99844 * 7 5 4 9 9 C 1.37875 * 120.00321 * 59.99753 * 7 5 4 10 10 N 1.31515 * 119.99926 * 0.02562 * 9 7 5 11 11 Si 1.86807 * 119.99899 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47201 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46685 * 119.99942 * 11 9 7 14 14 H 1.48496 * 109.46773 * 239.99816 * 11 9 7 15 15 C 1.53112 * 109.16707 * 57.65353 * 5 4 3 16 16 H 1.09007 * 109.49891 * 62.28504 * 15 5 4 17 17 N 1.46891 * 109.50745 * 182.36253 * 15 5 4 18 18 C 1.46853 * 110.99832 * 124.21123 * 2 1 3 19 19 H 1.08999 * 109.46692 * 56.05113 * 1 2 3 20 20 H 1.09002 * 109.46991 * 176.04490 * 1 2 3 21 21 H 1.09000 * 109.47202 * 296.04782 * 1 2 3 22 22 H 1.09000 * 109.46299 * 305.85220 * 3 2 1 23 23 H 1.08997 * 109.46352 * 65.82665 * 3 2 1 24 24 H 1.08996 * 109.50312 * 60.75518 * 4 3 2 25 25 H 1.08989 * 109.50117 * 180.83981 * 4 3 2 26 26 H 0.97001 * 120.00031 * 180.02562 * 10 9 7 27 27 H 1.00898 * 111.00600 * 180.02562 * 17 15 5 28 28 H 1.00908 * 111.00461 * 303.95487 * 17 15 5 29 29 H 1.09001 * 109.46125 * 294.17808 * 18 2 1 30 30 H 1.09003 * 109.46462 * 54.14202 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 1 3.8897 1.0359 1.9559 7 6 5.6133 0.4463 0.8432 8 1 6.0890 -0.5192 0.7534 9 6 6.3734 1.5958 0.8011 10 7 5.7942 2.7715 0.9108 11 14 8.2260 1.4833 0.5895 12 1 8.6274 0.0570 0.4920 13 1 8.6269 2.1968 -0.6496 14 1 8.8964 2.1069 1.7587 15 6 3.5181 -0.8715 1.0209 16 1 3.7814 -1.3837 0.0954 17 7 4.0468 -1.6249 2.1658 18 6 1.9953 -0.7708 1.1338 19 1 -0.3633 0.5739 -0.8525 20 1 -0.3633 -1.0252 -0.0709 21 1 -0.3633 0.4513 0.9233 22 1 1.5635 1.9257 -0.8330 23 1 1.7325 1.8608 0.9376 24 1 3.7814 0.8566 -1.0905 25 1 3.9099 2.3511 -0.1317 26 1 6.3289 3.5802 0.8808 27 1 3.6651 -2.5586 2.1916 28 1 5.0555 -1.6473 2.1493 29 1 1.7324 -0.2709 2.0660 30 1 1.5634 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258604368.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:23 Heat of formation + Delta-G solvation = -26.393062 kcal Electronic energy + Delta-G solvation = -11825.406025 eV Core-core repulsion = 9847.023848 eV Total energy + Delta-G solvation = -1978.382177 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.93845 -36.05904 -34.57256 -32.43716 -29.18658 -28.59797 -25.77804 -23.37811 -22.64145 -20.31903 -18.46679 -16.97466 -16.33960 -16.18494 -15.85116 -15.39381 -15.12212 -14.31888 -13.96521 -13.34818 -13.24213 -12.93031 -12.76673 -12.56089 -12.41653 -12.24256 -11.96369 -11.56373 -10.84514 -10.71965 -10.38942 -9.38778 -9.22246 -8.06266 -6.18781 1.41081 1.42987 1.53504 2.44542 3.02966 3.21765 3.97572 4.12941 4.23526 4.39357 4.48738 4.66225 4.68145 4.73535 4.86273 5.00088 5.04172 5.08683 5.24944 5.44868 5.61277 5.92935 5.98126 6.19114 6.28322 6.36049 6.53995 6.89032 6.90955 7.48214 8.98944 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.057540 B = 0.013015 C = 0.011157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.504626 B = 2150.887753 C = 2509.078455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.552 5.552 3 C 0.064 3.936 4 C -0.100 4.100 5 C 0.056 3.944 6 H -0.012 1.012 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.919 5.919 11 Si 0.955 3.045 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.106 3.894 16 H 0.019 0.981 17 N -0.844 5.844 18 C 0.074 3.926 19 H 0.078 0.922 20 H 0.082 0.918 21 H 0.022 0.978 22 H 0.077 0.923 23 H 0.013 0.987 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.259 0.741 27 H 0.339 0.661 28 H 0.346 0.654 29 H 0.020 0.980 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -5.693 -1.455 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.277 5.277 3 C -0.064 4.064 4 C -0.139 4.139 5 C 0.037 3.963 6 H 0.006 0.994 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.187 4.187 10 N -0.559 5.559 11 Si 0.781 3.219 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.005 4.005 16 H 0.037 0.963 17 N -0.376 5.376 18 C -0.055 4.055 19 H 0.096 0.904 20 H 0.100 0.900 21 H 0.041 0.959 22 H 0.096 0.904 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.038 0.962 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.047 -5.186 -1.432 8.866 hybrid contribution 1.241 0.133 0.027 1.248 sum -5.806 -5.053 -1.405 7.825 Atomic orbital electron populations 1.22425 0.85895 1.03049 1.00752 1.61896 1.08732 1.13811 1.43291 1.22104 0.96447 0.88752 0.99056 1.21480 0.92227 1.01979 0.98231 1.18631 0.93918 0.90787 0.92979 0.99421 1.21451 0.93056 0.92307 1.49071 0.92868 1.25729 1.02648 0.95251 0.95111 1.70026 1.36518 0.97829 1.51529 0.85559 0.80732 0.78281 0.77355 1.18994 1.20893 1.20987 1.21231 0.93191 0.95599 0.90489 0.96330 1.58593 1.13318 1.19824 1.45857 1.21953 0.94724 0.97977 0.90824 0.90374 0.89972 0.95936 0.90441 0.96853 0.94916 0.91584 0.93179 0.84884 0.83948 0.96162 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.59 127.69 1.22 1.93 16 2 N -0.55 -19.76 4.91 -922.55 -4.53 -24.29 16 3 C 0.06 2.59 5.46 86.33 0.47 3.06 16 4 C -0.10 -4.93 5.12 30.65 0.16 -4.77 16 5 C 0.06 2.87 1.87 -11.46 -0.02 2.85 16 6 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 7 C -0.52 -28.66 7.88 25.60 0.20 -28.46 16 8 H 0.05 2.84 6.99 -2.91 -0.02 2.82 16 9 C 0.01 0.60 5.30 84.65 0.45 1.05 16 10 N -0.92 -53.79 11.35 21.45 0.24 -53.55 16 11 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.11 4.53 2.85 44.97 0.13 4.66 16 16 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 17 N -0.84 -32.26 9.24 -168.49 -1.56 -33.82 16 18 C 0.07 2.71 5.04 86.32 0.44 3.15 16 19 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 20 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.08 2.77 8.09 -2.39 -0.02 2.75 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 3.63 6.15 -2.39 -0.01 3.61 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.34 10.34 9.04 -89.70 -0.81 9.53 16 28 H 0.35 13.82 7.52 -89.69 -0.67 13.14 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 Total: -1.00 -61.16 238.80 -1.14 -62.30 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.36 Total: 19.90 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.05 Total: -16.53 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -5.84 Total: -111.65 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.16 -1.14 -62.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258604368.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.903 kcal (2) G-P(sol) polarization free energy of solvation -61.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds