Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48503 * 109.47177 * 240.00380 * 3 2 1 5 5 H 1.48511 * 109.46883 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47416 * 119.99851 * 3 2 1 7 7 C 1.37877 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99662 * 359.97438 * 7 2 1 10 10 H 1.08994 * 108.89453 * 58.77693 * 9 7 2 11 11 C 1.53819 * 108.98399 * 300.00205 * 9 7 2 12 12 C 1.50816 * 111.61586 * 198.40308 * 11 9 7 13 13 N 1.47629 * 108.03649 * 95.07156 * 12 11 9 14 14 C 1.39781 * 114.76841 * 277.17080 * 13 12 11 15 15 C 1.54437 * 111.75951 * 62.27439 * 14 13 12 16 16 C 1.50757 * 109.11325 * 282.57558 * 15 14 13 17 17 H 1.09005 * 108.85163 * 332.24394 * 16 15 14 18 18 N 1.46897 * 108.85698 * 213.86260 * 16 15 14 19 19 H 0.96993 * 120.00528 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.04900 * 77.85593 * 11 9 7 21 21 H 1.09004 * 108.99244 * 318.91572 * 11 9 7 22 22 H 1.09001 * 109.75113 * 335.43965 * 12 11 9 23 23 H 1.09004 * 109.74603 * 214.70415 * 12 11 9 24 24 H 1.00896 * 111.00359 * 150.30161 * 13 12 11 25 25 H 1.08995 * 109.02346 * 301.68179 * 14 13 12 26 26 H 1.09005 * 109.02059 * 182.85641 * 14 13 12 27 27 H 1.09002 * 109.54495 * 42.48884 * 15 14 13 28 28 H 1.08999 * 109.54281 * 162.66761 * 15 14 13 29 29 H 1.00900 * 111.00339 * 59.99490 * 18 16 15 30 30 H 1.00900 * 111.00089 * 183.95506 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6114 -2.5373 -0.8821 11 6 0.3715 -2.5691 1.2594 12 6 -0.0558 -3.9837 1.5608 13 7 0.8941 -4.5496 2.5389 14 6 2.0730 -5.0565 1.9846 15 6 2.8911 -3.9560 1.2743 16 6 2.2638 -3.6610 -0.0645 17 1 1.7499 -4.5552 -0.4173 18 7 3.3249 -3.3183 -1.0208 19 1 -0.4850 0.8399 0.0004 20 1 -0.5155 -1.9539 1.1086 21 1 0.9348 -2.1792 2.1073 22 1 -0.0393 -4.5763 0.6461 23 1 -1.0613 -3.9829 1.9818 24 1 0.4442 -5.2380 3.1235 25 1 1.8208 -5.8335 1.2630 26 1 2.6793 -5.4937 2.7780 27 1 2.8923 -3.0521 1.8835 28 1 3.9154 -4.2994 1.1293 29 1 3.9783 -4.0802 -1.1244 30 1 2.9357 -3.0519 -1.9127 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258607031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -22.044826 kcal Electronic energy + Delta-G solvation = -12000.788898 eV Core-core repulsion = 10022.595275 eV Total energy + Delta-G solvation = -1978.193623 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.99538 -36.06409 -34.67815 -32.50679 -30.38309 -28.01944 -24.88131 -24.47759 -21.66982 -19.98383 -17.99592 -17.75155 -16.77347 -16.19577 -15.66639 -15.27705 -14.95685 -14.55446 -14.10662 -13.43442 -12.99258 -12.72195 -12.63117 -12.48254 -12.07635 -12.01011 -11.52787 -11.24886 -10.88181 -10.63765 -10.33069 -9.26493 -9.05179 -7.96640 -6.01124 1.44337 1.45829 1.53084 2.52672 3.30611 3.48372 3.84827 4.15509 4.28305 4.42901 4.56772 4.60317 4.74156 4.81742 4.93574 5.03235 5.26725 5.37525 5.53526 5.62696 5.83884 6.04745 6.12893 6.47294 6.48967 6.68702 6.84263 6.92890 7.11615 7.63870 9.10157 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.047186 B = 0.015022 C = 0.012965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.258743 B = 1863.424574 C = 2159.135513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.000 4.000 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.487 4.487 8 H 0.064 0.936 9 C 0.050 3.950 10 H -0.021 1.021 11 C -0.086 4.086 12 C 0.075 3.925 13 N -0.706 5.706 14 C 0.087 3.913 15 C -0.102 4.102 16 C 0.112 3.888 17 H 0.002 0.998 18 N -0.838 5.838 19 H 0.253 0.747 20 H 0.044 0.956 21 H 0.033 0.967 22 H 0.026 0.974 23 H 0.072 0.928 24 H 0.353 0.647 25 H 0.012 0.988 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.335 0.665 30 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -9.649 2.349 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.031 3.969 10 H -0.003 1.003 11 C -0.125 4.125 12 C -0.053 4.053 13 N -0.340 5.340 14 C -0.045 4.045 15 C -0.141 4.141 16 C 0.001 3.999 17 H 0.020 0.980 18 N -0.368 5.368 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.091 0.909 24 H 0.174 0.826 25 H 0.030 0.970 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.176 -8.374 2.942 9.427 hybrid contribution -0.563 -0.300 -1.159 1.323 sum 2.613 -8.674 1.782 9.233 Atomic orbital electron populations 1.70065 1.06991 1.26402 1.53581 1.25725 0.95556 1.02064 0.96255 0.85773 0.78272 0.79988 0.78447 1.20049 1.21705 1.20275 1.21481 0.93553 0.90786 1.46783 0.91813 1.19117 0.91939 0.93084 0.92782 1.00266 1.21154 0.99403 0.94253 0.97709 1.21692 0.94643 0.95801 0.93213 1.57142 1.07581 1.42742 1.26540 1.20758 0.91567 0.94321 0.97823 1.21431 0.98370 0.98848 0.95438 1.21147 0.91479 0.94496 0.92808 0.97978 1.58679 1.19735 1.43985 1.14395 0.93778 0.93723 0.94803 0.95547 0.90930 0.82627 0.96984 0.89434 0.93015 0.90872 0.85214 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 11.56 21.45 0.25 -55.35 16 2 C 0.00 0.01 5.30 84.66 0.45 0.46 16 3 Si 0.95 46.10 29.54 68.60 2.03 48.12 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.49 -27.30 7.59 25.60 0.19 -27.11 16 8 H 0.06 3.62 7.00 -2.91 -0.02 3.60 16 9 C 0.05 2.51 1.95 -10.83 -0.02 2.49 16 10 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 11 C -0.09 -4.17 4.23 30.16 0.13 -4.04 16 12 C 0.07 2.79 6.22 85.45 0.53 3.32 16 13 N -0.71 -22.69 6.07 -528.94 -3.21 -25.90 16 14 C 0.09 2.61 5.99 88.07 0.53 3.14 16 15 C -0.10 -3.76 5.27 30.35 0.16 -3.60 16 16 C 0.11 4.57 2.41 44.62 0.11 4.67 16 17 H 0.00 0.10 6.59 -2.38 -0.02 0.08 16 18 N -0.84 -31.85 7.69 -169.93 -1.31 -33.16 16 19 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 20 H 0.04 2.43 6.71 -2.39 -0.02 2.41 16 21 H 0.03 1.77 7.09 -2.39 -0.02 1.75 16 22 H 0.03 0.99 6.67 -2.39 -0.02 0.97 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.35 8.84 8.85 -89.70 -0.79 8.05 16 25 H 0.01 0.35 7.55 -2.39 -0.02 0.33 16 26 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.05 2.28 6.90 -2.39 -0.02 2.26 16 28 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 29 H 0.33 10.23 8.85 -89.69 -0.79 9.43 16 30 H 0.34 12.95 8.95 -89.69 -0.80 12.15 16 Total: -1.00 -63.08 230.82 -1.40 -64.48 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -1.24 Total: 22.47 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 2.08 Total: -20.67 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.27 Total: -114.41 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -63.08 -1.40 -64.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258607031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.438 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds