Wall clock time and date at job start Mon Mar 30 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47687 * 110.99520 * 2 1 4 4 C 1.50791 * 108.08861 * 151.97562 * 3 2 1 5 5 N 1.47742 * 111.90694 * 94.62223 * 4 3 2 6 6 C 1.48073 * 113.78513 * 318.86985 * 5 4 3 7 7 C 1.50743 * 112.94331 * 318.29037 * 6 5 4 8 8 C 1.40082 * 110.99848 * 231.35881 * 2 1 3 9 9 H 1.09002 * 109.07543 * 67.62509 * 8 2 1 10 10 C 1.50694 * 109.07331 * 308.59805 * 8 2 1 11 11 H 1.08004 * 120.00419 * 359.03583 * 10 8 2 12 12 C 1.37879 * 120.00254 * 179.03504 * 10 8 2 13 13 N 1.31519 * 119.99840 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00376 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46904 * 90.00120 * 14 12 10 16 16 H 1.48499 * 109.47494 * 210.00345 * 14 12 10 17 17 H 1.48506 * 109.46978 * 330.00340 * 14 12 10 18 18 H 1.09001 * 109.47051 * 188.64194 * 1 2 3 19 19 H 1.08998 * 109.47097 * 308.64419 * 1 2 3 20 20 H 1.09007 * 109.47369 * 68.64466 * 1 2 3 21 21 H 1.08995 * 109.73846 * 271.62012 * 3 2 1 22 22 H 1.08998 * 109.73730 * 32.33052 * 3 2 1 23 23 H 1.08999 * 108.98946 * 215.24451 * 4 3 2 24 24 H 1.08995 * 108.99140 * 334.07724 * 4 3 2 25 25 H 1.00906 * 110.99544 * 192.81580 * 5 4 3 26 26 H 1.08999 * 108.78314 * 79.18351 * 6 5 4 27 27 H 1.08997 * 108.78668 * 197.39615 * 6 5 4 28 28 H 1.09003 * 109.55836 * 332.80999 * 7 6 5 29 29 H 1.08999 * 109.56202 * 212.49160 * 7 6 5 30 30 H 0.96992 * 120.00019 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3788 0.0000 4 6 3.3472 1.3626 0.6735 5 7 4.4490 1.2355 -0.3025 6 6 4.1726 0.2730 -1.3933 7 6 3.5026 -0.9875 -0.9089 8 6 1.9710 -0.8166 -1.0215 9 1 1.7325 -0.3680 -1.9858 10 6 1.3179 -2.1719 -0.9342 11 1 0.6007 -2.3765 -0.1531 12 6 1.6360 -3.1509 -1.8515 13 7 2.5098 -2.9020 -2.8025 14 14 0.8271 -4.8311 -1.7429 15 1 -0.4215 -4.8322 -2.5468 16 1 1.7561 -5.8629 -2.2700 17 1 0.5036 -5.1341 -0.3256 18 1 -0.3633 -1.0160 0.1544 19 1 -0.3633 0.6417 0.8026 20 1 -0.3634 0.3742 -0.9572 21 1 2.1030 1.7329 -1.0255 22 1 1.3207 2.0331 0.5487 23 1 3.4749 2.2886 1.2341 24 1 3.3884 0.5210 1.3648 25 1 5.3187 1.0174 0.1604 26 1 3.5279 0.7527 -2.1296 27 1 5.1141 0.0076 -1.8742 28 1 3.7740 -1.1685 0.1311 29 1 3.8219 -1.8296 -1.5228 30 1 2.7339 -3.5907 -3.4476 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259496886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:36 Heat of formation + Delta-G solvation = -3.580678 kcal Electronic energy + Delta-G solvation = -12042.825079 eV Core-core repulsion = 10065.432121 eV Total energy + Delta-G solvation = -1977.392957 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26492 -36.11347 -34.94375 -32.36336 -29.21794 -28.25816 -25.75802 -24.59488 -21.42321 -20.83761 -18.63566 -17.49134 -16.58506 -16.24498 -15.93332 -15.42045 -14.73107 -14.21540 -13.91364 -13.35002 -13.00094 -12.97833 -12.79549 -12.73090 -12.32240 -12.23292 -11.82115 -11.72429 -11.49355 -10.74571 -10.49040 -9.21337 -8.85252 -8.10921 -6.25475 1.39998 1.41022 1.51496 2.40306 3.13269 3.32292 3.48845 4.18655 4.32193 4.40178 4.52045 4.62089 4.63193 4.79549 4.86425 4.96486 5.11196 5.15962 5.27105 5.33905 5.51111 5.71599 5.74897 6.06714 6.29115 6.48885 6.61468 6.87431 7.00707 7.46329 8.92711 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052239 B = 0.014779 C = 0.012304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.864430 B = 1894.094855 C = 2275.200710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.561 5.561 3 C 0.057 3.943 4 C 0.069 3.931 5 N -0.697 5.697 6 C 0.074 3.926 7 C -0.126 4.126 8 C 0.237 3.763 9 H -0.059 1.059 10 C -0.527 4.527 11 H 0.062 0.938 12 C 0.010 3.990 13 N -0.916 5.916 14 Si 0.959 3.041 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.268 1.268 18 H 0.061 0.939 19 H 0.079 0.921 20 H 0.001 0.999 21 H 0.020 0.980 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.032 0.968 25 H 0.347 0.653 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 5.531 5.428 7.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.285 5.285 3 C -0.070 4.070 4 C -0.059 4.059 5 N -0.329 5.329 6 C -0.055 4.055 7 C -0.166 4.166 8 C 0.128 3.872 9 H -0.042 1.042 10 C -0.565 4.565 11 H 0.080 0.920 12 C -0.188 4.188 13 N -0.556 5.556 14 Si 0.785 3.215 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 H 0.080 0.920 19 H 0.097 0.903 20 H 0.019 0.981 21 H 0.038 0.962 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.050 0.950 25 H 0.164 0.836 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.534 5.772 5.311 7.862 hybrid contribution -0.493 -1.551 -0.735 1.786 sum 0.041 4.221 4.576 6.226 Atomic orbital electron populations 1.22211 0.87303 1.02063 0.98600 1.59200 1.07899 1.11129 1.50287 1.21940 0.96760 0.89282 0.99031 1.21698 0.89712 1.01086 0.93451 1.60641 1.06043 1.51256 1.14938 1.21594 0.99260 0.90944 0.93725 1.21861 0.97049 0.98724 0.98980 1.17915 0.92484 0.91083 0.85741 1.04173 1.21687 1.24206 0.97749 1.12906 0.91989 1.25745 0.95762 1.02306 0.95011 1.70024 1.33874 1.34989 1.16675 0.85538 0.78208 0.79361 0.78417 1.20278 1.20826 1.19287 0.92031 0.90279 0.98054 0.96170 0.88509 0.88484 0.95000 0.83588 0.94598 0.91962 0.94629 0.90837 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.83 9.06 127.69 1.16 2.98 16 2 N -0.56 -24.71 4.06 -916.70 -3.72 -28.43 16 3 C 0.06 2.09 5.37 85.43 0.46 2.54 16 4 C 0.07 2.28 6.10 85.42 0.52 2.80 16 5 N -0.70 -23.84 6.94 -516.84 -3.58 -27.42 16 6 C 0.07 3.08 6.00 85.34 0.51 3.60 16 7 C -0.13 -6.18 4.85 30.38 0.15 -6.03 16 8 C 0.24 12.36 1.48 45.92 0.07 12.43 16 9 H -0.06 -3.53 7.60 -2.39 -0.02 -3.55 16 10 C -0.53 -29.41 7.78 25.60 0.20 -29.21 16 11 H 0.06 3.41 5.98 -2.91 -0.02 3.39 16 12 C 0.01 0.58 5.21 84.65 0.44 1.02 16 13 N -0.92 -53.07 11.25 21.45 0.24 -52.83 16 14 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H 0.06 2.63 5.81 -2.39 -0.01 2.62 16 19 H 0.08 2.51 7.84 -2.39 -0.02 2.49 16 20 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 21 H 0.02 0.82 6.77 -2.39 -0.02 0.80 16 22 H 0.10 2.89 7.65 -2.39 -0.02 2.87 16 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.03 1.14 7.19 -2.39 -0.02 1.12 16 25 H 0.35 10.19 8.91 -89.69 -0.80 9.39 16 26 H 0.04 1.65 6.52 -2.39 -0.02 1.64 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.03 1.71 7.19 -2.39 -0.02 1.70 16 29 H 0.07 4.06 5.73 -2.39 -0.01 4.05 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -61.26 228.90 -1.21 -62.47 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.33 Total: 10.18 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 3.51 Total: -9.86 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -7.07 Total: -108.68 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.26 -1.21 -62.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259496886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.887 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds