Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49471 * 2 1 4 4 O 1.42907 * 109.47793 * 239.97184 * 2 1 3 5 5 C 1.42903 * 114.09619 * 178.85883 * 4 2 1 6 6 C 1.53090 * 109.41592 * 61.16410 * 5 4 2 7 7 C 1.53177 * 109.16006 * 302.38769 * 6 5 4 8 8 C 1.53094 * 109.48077 * 120.03524 * 2 1 3 9 9 H 1.08998 * 109.57514 * 57.64984 * 8 2 1 10 10 C 1.53000 * 109.51760 * 297.49078 * 8 2 1 11 11 C 1.50703 * 109.46912 * 175.31733 * 10 8 2 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48500 * 109.47049 * 210.00797 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 H 1.09001 * 109.47234 * 299.96739 * 1 2 3 20 20 H 1.09001 * 109.47120 * 59.97054 * 1 2 3 21 21 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.48134 * 301.17253 * 5 4 2 23 23 H 1.09009 * 109.48032 * 181.13997 * 5 4 2 24 24 H 1.08999 * 109.52550 * 182.48525 * 6 5 4 25 25 H 1.09002 * 109.58032 * 62.32387 * 6 5 4 26 26 H 1.09006 * 109.54494 * 297.11861 * 7 6 5 27 27 H 1.08997 * 109.61933 * 176.89010 * 7 6 5 28 28 H 1.09002 * 109.47398 * 295.31811 * 10 8 2 29 29 H 1.09001 * 109.47194 * 55.31992 * 10 8 2 30 30 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4306 -0.7093 -1.2791 6 6 4.0175 -1.4602 -0.0811 7 6 3.5711 -0.7711 1.2120 8 6 2.0405 -0.7224 1.2495 9 1 1.6442 -1.7376 1.2719 10 6 1.5834 0.0327 2.4992 11 6 1.9874 -0.7396 3.7286 12 1 2.5174 -1.6752 3.6285 13 6 1.6802 -0.2518 4.9811 14 7 2.0331 -0.9255 6.0539 15 14 0.7639 1.3669 5.1541 16 1 -0.6984 1.1088 5.1684 17 1 1.1624 2.0282 6.4226 18 1 1.0994 2.2505 4.0087 19 1 -0.3634 0.5133 0.8903 20 1 -0.3633 0.5143 -0.8897 21 1 -0.3634 -1.0276 -0.0005 22 1 3.8192 0.3089 -1.2959 23 1 3.7099 -1.2204 -2.2006 24 1 5.1058 -1.4500 -0.1423 25 1 3.6622 -2.4907 -0.0860 26 1 3.9689 0.2434 1.2407 27 1 3.9392 -1.3315 2.0713 28 1 2.0497 1.0178 2.5194 29 1 0.4993 0.1443 2.4801 30 1 1.8167 -0.5825 6.9350 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259558723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -72.984705 kcal Electronic energy + Delta-G solvation = -11697.345576 eV Core-core repulsion = 9684.650283 eV Total energy + Delta-G solvation = -2012.695293 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.10450 -34.50147 -32.62300 -32.14227 -28.80095 -26.55963 -23.95751 -21.89646 -20.85168 -19.28020 -16.93157 -15.72242 -15.24329 -14.37268 -14.21783 -13.83555 -13.31094 -12.63905 -12.40452 -12.05586 -11.96323 -11.48591 -11.40054 -10.77711 -10.70905 -10.57162 -10.22328 -9.80752 -9.64805 -9.59485 -9.17945 -8.68493 -8.51448 -6.03496 -4.00627 3.30108 3.37872 3.40897 4.17737 4.45279 5.25334 5.27237 5.35151 5.38067 5.46820 5.64945 5.74540 5.84483 6.00520 6.12507 6.20437 6.29055 6.38322 6.51495 6.56396 6.79894 6.88082 7.00095 7.26006 7.42975 7.66656 7.80562 8.55619 9.01706 9.59173 11.09917 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.052779 B = 0.012420 C = 0.010772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.383470 B = 2253.883145 C = 2598.818087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.050 0.950 4 O -0.389 6.389 5 C 0.065 3.935 6 C -0.157 4.157 7 C -0.108 4.108 8 C -0.099 4.099 9 H 0.070 0.930 10 C -0.009 4.009 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.065 3.935 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 H 0.076 0.924 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 2.465 -11.645 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.068 0.932 4 O -0.309 6.309 5 C -0.012 4.012 6 C -0.195 4.195 7 C -0.146 4.146 8 C -0.118 4.118 9 H 0.088 0.912 10 C -0.046 4.046 11 C -0.552 4.552 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.544 5.544 15 Si 0.704 3.296 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 H 0.095 0.905 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.606 2.391 -11.581 11.840 hybrid contribution -0.209 0.914 0.528 1.076 sum 0.397 3.305 -11.053 11.543 Atomic orbital electron populations 1.21804 0.93665 1.02724 1.01817 1.22263 0.94746 0.94755 0.85322 0.93199 1.87839 1.20593 1.78490 1.43928 1.22466 0.81692 0.99059 0.98007 1.22246 1.00154 1.00635 0.96488 1.21563 0.96132 1.00295 0.96585 1.21654 0.95159 1.00427 0.94558 0.91156 1.19656 0.95994 0.95849 0.93136 1.21120 1.37026 1.08095 0.88964 0.90908 1.25026 0.95546 0.97033 0.95933 1.69913 1.47531 1.39014 0.97905 0.86822 0.80446 0.84714 0.77573 1.20291 1.21448 1.19041 0.90517 0.92948 0.92018 0.93872 0.89837 0.91768 0.91493 0.92795 0.90313 0.96722 0.96512 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.28 37.16 0.34 -1.98 16 2 C 0.09 1.54 2.76 -26.68 -0.07 1.46 16 3 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.39 -6.75 10.41 -35.23 -0.37 -7.11 16 5 C 0.06 0.94 6.84 37.20 0.25 1.20 16 6 C -0.16 -2.42 6.14 -26.59 -0.16 -2.58 16 7 C -0.11 -2.04 5.07 -26.55 -0.13 -2.18 16 8 C -0.10 -2.02 1.84 -90.48 -0.17 -2.18 16 9 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 10 C -0.01 -0.21 3.34 -27.88 -0.09 -0.31 16 11 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 12 H 0.07 2.21 7.30 -52.49 -0.38 1.82 16 13 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 15 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 19 H 0.08 1.26 6.40 -51.93 -0.33 0.93 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.64 7.06 -51.93 -0.37 1.28 16 28 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 29 H 0.02 0.39 5.70 -51.93 -0.30 0.09 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 237.58 15.07 3.58 3.58 Total: -1.00 -30.12 237.58 -5.84 -35.97 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.72 Total: -2.78 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -0.44 Total: -19.56 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.37 Total: -7.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.12 -5.84 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.020 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds