Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49471 * 2 1 4 4 O 1.42907 * 109.47793 * 239.97184 * 2 1 3 5 5 C 1.42903 * 114.09619 * 178.85883 * 4 2 1 6 6 C 1.53090 * 109.41592 * 61.16410 * 5 4 2 7 7 C 1.53177 * 109.16006 * 302.38769 * 6 5 4 8 8 C 1.53094 * 109.48077 * 120.03524 * 2 1 3 9 9 H 1.08998 * 109.57514 * 57.64984 * 8 2 1 10 10 C 1.53000 * 109.51760 * 297.49078 * 8 2 1 11 11 C 1.50703 * 109.46912 * 175.31733 * 10 8 2 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48500 * 109.47049 * 210.00797 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 H 1.09001 * 109.47234 * 299.96739 * 1 2 3 20 20 H 1.09001 * 109.47120 * 59.97054 * 1 2 3 21 21 H 1.09000 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.48134 * 301.17253 * 5 4 2 23 23 H 1.09009 * 109.48032 * 181.13997 * 5 4 2 24 24 H 1.08999 * 109.52550 * 182.48525 * 6 5 4 25 25 H 1.09002 * 109.58032 * 62.32387 * 6 5 4 26 26 H 1.09006 * 109.54494 * 297.11861 * 7 6 5 27 27 H 1.08997 * 109.61933 * 176.89010 * 7 6 5 28 28 H 1.09002 * 109.47398 * 295.31811 * 10 8 2 29 29 H 1.09001 * 109.47194 * 55.31992 * 10 8 2 30 30 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 3.4306 -0.7093 -1.2791 6 6 4.0175 -1.4602 -0.0811 7 6 3.5711 -0.7711 1.2120 8 6 2.0405 -0.7224 1.2495 9 1 1.6442 -1.7376 1.2719 10 6 1.5834 0.0327 2.4992 11 6 1.9874 -0.7396 3.7286 12 1 2.5174 -1.6752 3.6285 13 6 1.6802 -0.2518 4.9811 14 7 2.0331 -0.9255 6.0539 15 14 0.7639 1.3669 5.1541 16 1 -0.6984 1.1088 5.1684 17 1 1.1624 2.0282 6.4226 18 1 1.0994 2.2505 4.0087 19 1 -0.3634 0.5133 0.8903 20 1 -0.3633 0.5143 -0.8897 21 1 -0.3634 -1.0276 -0.0005 22 1 3.8192 0.3089 -1.2959 23 1 3.7099 -1.2204 -2.2006 24 1 5.1058 -1.4500 -0.1423 25 1 3.6622 -2.4907 -0.0860 26 1 3.9689 0.2434 1.2407 27 1 3.9392 -1.3315 2.0713 28 1 2.0497 1.0178 2.5194 29 1 0.4993 0.1443 2.4801 30 1 1.8167 -0.5825 6.9350 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558723.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = -92.354095 kcal Electronic energy + Delta-G solvation = -11698.185496 eV Core-core repulsion = 9684.650283 eV Total energy + Delta-G solvation = -2013.535213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.49447 -36.19551 -34.26742 -33.86092 -30.52820 -28.07024 -25.61391 -23.45020 -22.37818 -20.84016 -19.02216 -17.12978 -16.65924 -16.21303 -15.65128 -15.35029 -14.91070 -14.58998 -13.86574 -13.72205 -13.35608 -13.05862 -12.87995 -12.46935 -12.27072 -12.08317 -11.82582 -11.70546 -11.38682 -11.07323 -11.06444 -10.72227 -10.16763 -8.27342 -6.30152 1.35887 1.37590 1.49215 2.36913 2.92653 3.07842 3.88928 3.98774 4.02542 4.10551 4.32710 4.46357 4.57455 4.66691 4.81094 4.88245 4.89304 5.02516 5.08037 5.12223 5.24247 5.26973 5.38587 5.53091 5.64253 5.69911 6.28760 6.39657 6.76818 7.33273 8.89504 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.052779 B = 0.012420 C = 0.010772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.383470 B = 2253.883145 C = 2598.818087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.060 0.940 4 O -0.398 6.398 5 C 0.060 3.940 6 C -0.151 4.151 7 C -0.110 4.110 8 C -0.099 4.099 9 H 0.048 0.952 10 C -0.004 4.004 11 C -0.521 4.521 12 H 0.030 0.970 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.947 3.053 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.244 1.244 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.019 0.981 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 4.228 -13.575 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.078 0.922 4 O -0.318 6.318 5 C -0.016 4.016 6 C -0.188 4.188 7 C -0.147 4.147 8 C -0.117 4.117 9 H 0.066 0.934 10 C -0.042 4.042 11 C -0.559 4.559 12 H 0.049 0.951 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.771 3.229 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.168 1.168 19 H 0.092 0.908 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.132 0.868 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.139 4.148 -13.539 14.160 hybrid contribution 0.019 0.256 1.130 1.159 sum 0.157 4.403 -12.409 13.168 Atomic orbital electron populations 1.21814 0.92593 1.02770 1.02856 1.22155 0.95708 0.94628 0.84049 0.92191 1.87839 1.22334 1.78489 1.43105 1.22719 0.80200 1.00172 0.98523 1.22204 1.01811 0.99869 0.94958 1.21519 0.95270 1.00494 0.97439 1.21586 0.96145 0.99151 0.94861 0.93363 1.19588 0.96456 0.95558 0.92557 1.21420 1.36153 1.07089 0.91192 0.95120 1.26013 0.96691 1.01332 0.95420 1.70076 1.49431 1.41373 0.98627 0.85697 0.79246 0.79763 0.78212 1.19083 1.21211 1.16760 0.90800 0.90549 0.92535 0.92375 0.86792 0.89261 0.92261 0.92259 0.93783 0.96272 0.95584 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.28 71.98 0.67 -3.63 16 2 C 0.09 3.06 2.76 30.62 0.08 3.15 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 O -0.40 -12.65 10.41 -148.98 -1.55 -14.20 16 5 C 0.06 1.54 6.84 72.01 0.49 2.04 16 6 C -0.15 -4.37 6.14 30.68 0.19 -4.18 16 7 C -0.11 -4.12 5.07 30.71 0.16 -3.96 16 8 C -0.10 -3.97 1.84 -10.70 -0.02 -3.99 16 9 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 10 C 0.00 -0.20 3.34 29.85 0.10 -0.10 16 11 C -0.52 -30.13 9.01 25.60 0.23 -29.90 16 12 H 0.03 1.97 7.30 -2.91 -0.02 1.95 16 13 C 0.00 0.09 5.47 84.65 0.46 0.56 16 14 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 15 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 19 H 0.07 2.24 6.40 -2.39 -0.02 2.22 16 20 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 21 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.04 1.92 7.06 -2.39 -0.02 1.90 16 28 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 29 H 0.03 1.17 5.70 -2.39 -0.01 1.16 16 30 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -65.63 237.58 4.03 -61.60 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.04 Total: 6.68 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.36 Total: -40.03 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.30 Total: -60.18 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.55 Total: -14.20 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -65.63 4.03 -61.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558723.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.753 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds