Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.48401 * 2 1 4 4 O 1.42893 * 109.48163 * 239.96912 * 2 1 3 5 5 C 1.42906 * 114.09782 * 301.17227 * 4 2 1 6 6 C 1.53089 * 109.41680 * 298.84162 * 5 4 2 7 7 C 1.53175 * 109.16141 * 57.60590 * 6 5 4 8 8 C 1.53094 * 109.47946 * 120.02395 * 2 1 3 9 9 H 1.09002 * 109.52271 * 182.34352 * 8 2 1 10 10 C 1.53004 * 109.52368 * 302.46804 * 8 2 1 11 11 C 1.50699 * 109.46843 * 185.00173 * 10 8 2 12 12 H 1.08002 * 120.00516 * 359.97438 * 11 10 8 13 13 C 1.37884 * 119.99783 * 180.02562 * 11 10 8 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 10 16 16 H 1.48497 * 109.47172 * 179.72730 * 15 13 11 17 17 H 1.48506 * 109.47132 * 299.72429 * 15 13 11 18 18 H 1.48501 * 109.47173 * 59.72550 * 15 13 11 19 19 H 1.08999 * 109.47111 * 299.97055 * 1 2 3 20 20 H 1.08998 * 109.47060 * 59.97548 * 1 2 3 21 21 H 1.08997 * 109.46754 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47855 * 58.82836 * 5 4 2 23 23 H 1.09000 * 109.48251 * 178.84420 * 5 4 2 24 24 H 1.08995 * 109.52488 * 177.51288 * 6 5 4 25 25 H 1.09000 * 109.52475 * 297.64063 * 6 5 4 26 26 H 1.09001 * 109.54295 * 183.15221 * 7 6 5 27 27 H 1.09009 * 109.54279 * 62.88877 * 7 6 5 28 28 H 1.09001 * 109.46361 * 65.00514 * 10 8 2 29 29 H 1.08997 * 109.46991 * 305.00405 * 10 8 2 30 30 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0066 -0.6742 -1.1663 5 6 1.5646 -2.0285 -1.2789 6 6 2.0766 -2.8322 -0.0807 7 6 1.5759 -2.1812 1.2123 8 6 2.0406 -0.7222 1.2496 9 1 3.1298 -0.6864 1.2716 10 6 1.4813 -0.0392 2.4993 11 6 2.0804 -0.6724 3.7285 12 1 2.7890 -1.4814 3.6286 13 6 1.7233 -0.2196 4.9810 14 7 0.8594 0.7645 5.1028 15 14 2.4718 -0.9994 6.5045 16 1 1.9325 -0.3333 7.7172 17 1 2.1300 -2.4441 6.5399 18 1 3.9478 -0.8406 6.4675 19 1 -0.3633 0.5134 0.8902 20 1 -0.3633 0.5142 -0.8898 21 1 -0.3633 -1.0277 -0.0005 22 1 0.4750 -2.0551 -1.2957 23 1 1.9529 -2.4622 -2.2004 24 1 1.7038 -3.8546 -0.1418 25 1 3.1665 -2.8409 -0.0868 26 1 1.9827 -2.7156 2.0708 27 1 0.4868 -2.2179 1.2410 28 1 0.3977 -0.1550 2.5223 29 1 1.7330 1.0211 2.4773 30 1 0.6079 1.0827 5.9839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259558725.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -91.553996 kcal Electronic energy + Delta-G solvation = -11752.105801 eV Core-core repulsion = 9738.605284 eV Total energy + Delta-G solvation = -2013.500518 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.73846 -36.15591 -34.24553 -33.26989 -30.24798 -28.05001 -25.71215 -24.11842 -22.69675 -19.71513 -18.60849 -17.32876 -16.74544 -16.49972 -15.69631 -15.11704 -14.97679 -14.12528 -13.83241 -13.69365 -13.35848 -12.95312 -12.83922 -12.51216 -12.49036 -12.06517 -11.89832 -11.72985 -11.29746 -11.01210 -10.78883 -10.50962 -10.13360 -8.18132 -6.27250 1.39080 1.41368 1.49158 2.41014 3.02276 3.14994 3.93107 4.04867 4.08835 4.14891 4.30882 4.50049 4.60006 4.67218 4.77687 4.91483 4.99954 5.04020 5.21018 5.23265 5.27967 5.37426 5.48177 5.56124 5.79169 5.87201 6.26888 6.40303 6.87630 7.40640 8.93183 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.063611 B = 0.011133 C = 0.010057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.066914 B = 2514.449916 C = 2783.513596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.090 0.910 4 O -0.396 6.396 5 C 0.053 3.947 6 C -0.150 4.150 7 C -0.105 4.105 8 C -0.102 4.102 9 H 0.048 0.952 10 C 0.037 3.963 11 C -0.533 4.533 12 H 0.057 0.943 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.959 3.041 16 H -0.284 1.284 17 H -0.267 1.267 18 H -0.270 1.270 19 H 0.056 0.944 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.005 0.995 29 H -0.014 1.014 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -5.869 -9.765 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.035 3.965 3 H 0.107 0.893 4 O -0.315 6.315 5 C -0.023 4.023 6 C -0.187 4.187 7 C -0.143 4.143 8 C -0.121 4.121 9 H 0.066 0.934 10 C 0.000 4.000 11 C -0.571 4.571 12 H 0.075 0.925 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.783 3.217 16 H -0.209 1.209 17 H -0.192 1.192 18 H -0.195 1.195 19 H 0.075 0.925 20 H 0.090 0.910 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.005 0.995 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.179 -5.678 -9.780 11.310 hybrid contribution 0.116 -0.094 1.415 1.423 sum 0.295 -5.771 -8.365 10.167 Atomic orbital electron populations 1.22359 0.95696 1.02835 1.02320 1.22156 0.94203 0.95741 0.84433 0.89256 1.87886 1.74411 1.25967 1.43285 1.22759 0.99330 0.81516 0.98708 1.22198 1.01399 1.00279 0.94841 1.21501 1.00241 0.94939 0.97580 1.21658 0.99097 0.96386 0.94973 0.93356 1.18991 0.95277 0.93941 0.91817 1.21603 1.25267 1.18118 0.92135 0.92522 1.25904 0.95657 0.95628 1.02484 1.70081 1.34488 1.28361 1.24335 0.85599 0.78856 0.78847 0.78354 1.20898 1.19205 1.19509 0.92521 0.90966 0.91525 0.92266 0.86947 0.89117 0.91931 0.92941 0.92488 0.97704 0.99516 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 8.24 71.98 0.59 -5.20 16 2 C 0.09 3.36 3.47 30.63 0.11 3.47 16 3 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 4 O -0.40 -13.29 10.60 -148.98 -1.58 -14.87 16 5 C 0.05 1.41 6.52 72.01 0.47 1.87 16 6 C -0.15 -4.24 6.14 30.68 0.19 -4.05 16 7 C -0.11 -3.90 4.76 30.71 0.15 -3.75 16 8 C -0.10 -4.32 2.11 -10.70 -0.02 -4.34 16 9 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 10 C 0.04 1.93 3.87 29.85 0.12 2.04 16 11 C -0.53 -30.27 8.46 25.60 0.22 -30.05 16 12 H 0.06 3.12 7.08 -2.91 -0.02 3.10 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 15 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 H 0.06 2.11 6.50 -2.39 -0.02 2.10 16 20 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.07 2.07 4.97 -2.39 -0.01 2.06 16 22 H 0.06 1.46 6.34 -2.38 -0.02 1.45 16 23 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 2.12 7.08 -2.39 -0.02 2.10 16 27 H 0.06 2.10 6.62 -2.38 -0.02 2.08 16 28 H 0.00 0.26 6.68 -2.39 -0.02 0.24 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -62.91 234.35 4.11 -58.80 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.10 Total: 5.42 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 2.27 Total: -39.51 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.40 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.58 Total: -14.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.91 4.11 -58.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259558725.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.754 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds