Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42898 * 114.00038 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.01844 * 28.60779 * 4 3 2 6 6 C 1.54262 * 110.07616 * 267.19126 * 4 3 2 7 7 C 1.54885 * 104.19889 * 264.30326 * 6 4 3 8 8 C 1.54963 * 102.77651 * 322.08214 * 7 6 4 9 9 C 1.53874 * 110.03600 * 150.00022 * 4 3 2 10 10 H 1.09009 * 110.02942 * 0.02562 * 9 4 3 11 11 C 1.50696 * 110.03513 * 238.62238 * 9 4 3 12 12 H 1.07995 * 120.00332 * 0.68234 * 11 9 4 13 13 C 1.37880 * 119.99983 * 180.69069 * 11 9 4 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 H 1.08995 * 109.47192 * 299.99727 * 1 2 3 20 20 H 1.08998 * 109.47143 * 59.99623 * 1 2 3 21 21 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46867 * 240.00512 * 2 1 3 23 23 H 1.08998 * 109.47143 * 120.00377 * 2 1 3 24 24 H 1.09004 * 110.48599 * 22.98361 * 6 4 3 25 25 H 1.09002 * 110.49213 * 145.49104 * 6 4 3 26 26 H 1.09010 * 110.75748 * 80.36765 * 7 6 4 27 27 H 1.08997 * 110.76147 * 203.55516 * 7 6 4 28 28 H 1.08996 * 110.47633 * 279.23372 * 8 7 6 29 29 H 1.09000 * 110.53247 * 156.56814 * 8 7 6 30 30 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8736 0.5933 -0.4913 6 6 3.9537 1.5725 1.4464 7 6 4.1043 3.0964 1.6786 8 6 4.6238 3.6021 0.3090 9 6 3.8572 2.7499 -0.7234 10 1 2.9774 3.2900 -1.0733 11 6 4.7552 2.4169 -1.8868 12 1 4.9956 1.3871 -2.1061 13 6 5.2703 3.4271 -2.6713 14 7 4.9774 4.6812 -2.4045 15 14 6.3840 3.0144 -4.1131 16 1 7.7965 2.9875 -3.6554 17 1 6.0151 1.6834 -4.6586 18 1 6.2261 4.0443 -5.1712 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.2332 1.1493 2.1463 25 1 4.9175 1.0726 1.5437 26 1 3.1411 3.5480 1.9164 27 1 4.8287 3.2972 2.4679 28 1 5.6970 3.4325 0.2220 29 1 4.3918 4.6591 0.1788 30 1 4.3987 4.8954 -1.6561 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -74.550165 kcal Electronic energy + Delta-G solvation = -11634.076938 eV Core-core repulsion = 9621.313761 eV Total energy + Delta-G solvation = -2012.763176 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.32563 -35.56140 -32.52398 -30.68269 -27.77366 -26.77809 -23.65125 -22.40313 -19.80776 -19.22504 -16.93016 -16.19467 -15.11256 -14.33721 -14.00825 -13.73327 -12.86939 -12.54430 -12.32210 -12.08974 -11.65831 -11.10982 -10.90077 -10.66185 -10.51614 -10.22210 -10.19069 -10.01006 -9.70387 -9.46425 -8.75130 -8.40539 -8.28316 -6.28670 -4.00599 3.44817 3.48654 3.64252 4.35986 4.59252 5.33198 5.39248 5.48777 5.59048 5.62870 5.67734 5.77225 5.93751 6.18199 6.21552 6.34308 6.39049 6.54829 6.55424 6.66376 6.80664 6.95664 7.17889 7.38495 7.62403 8.08225 8.32177 8.47373 8.93810 9.70929 11.09574 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041378 B = 0.012682 C = 0.010751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.529542 B = 2207.255699 C = 2603.803276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.095 3.905 5 H 0.055 0.945 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.110 4.110 9 C 0.035 3.965 10 H 0.032 0.968 11 C -0.594 4.594 12 H 0.047 0.953 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.284 1.284 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 -6.987 5.410 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.038 3.962 5 H 0.073 0.927 6 C -0.179 4.179 7 C -0.161 4.161 8 C -0.148 4.148 9 C 0.016 3.984 10 H 0.050 0.950 11 C -0.632 4.632 12 H 0.066 0.934 13 C -0.185 4.185 14 N -0.550 5.550 15 Si 0.898 3.102 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.210 1.210 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.962 -6.151 4.163 7.996 hybrid contribution -0.682 -0.997 1.315 1.786 sum -3.644 -7.148 5.478 9.715 Atomic orbital electron populations 1.21720 0.94666 1.01367 1.02812 1.22361 0.94841 0.85679 0.99228 1.87944 1.22926 1.24541 1.94865 1.23057 0.78611 1.00668 0.93835 0.92709 1.22808 1.00035 0.97413 0.97674 1.22507 0.99868 0.95278 0.98430 1.22576 1.00290 0.99000 0.92960 1.19512 0.95408 0.90203 0.93251 0.95029 1.22040 1.32368 0.94847 1.13977 0.93439 1.25759 0.98362 0.93311 1.01069 1.70744 1.35187 1.18496 1.30545 0.83537 0.75742 0.75107 0.75776 1.21531 1.21603 1.21007 0.92306 0.91967 0.91863 0.93892 0.94481 0.92741 0.91849 0.92508 0.93210 0.92187 0.93056 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 37.16 0.38 -1.65 16 2 C 0.06 0.94 6.50 37.16 0.24 1.18 16 3 O -0.38 -8.21 9.89 -35.23 -0.35 -8.56 16 4 C 0.10 2.14 3.03 -25.62 -0.08 2.06 16 5 H 0.05 1.24 7.03 -51.93 -0.37 0.88 16 6 C -0.14 -2.74 6.57 -25.08 -0.16 -2.90 16 7 C -0.12 -2.44 6.91 -24.70 -0.17 -2.61 16 8 C -0.11 -2.63 5.28 -25.03 -0.13 -2.76 16 9 C 0.03 0.91 2.32 -90.66 -0.21 0.70 16 10 H 0.03 0.91 7.81 -51.92 -0.41 0.51 16 11 C -0.59 -16.96 8.37 -34.44 -0.29 -17.24 16 12 H 0.05 1.34 7.33 -52.49 -0.38 0.96 16 13 C 0.02 0.56 5.32 -17.82 -0.09 0.47 16 14 N -0.91 -27.77 13.41 55.43 0.74 -27.02 16 15 Si 1.07 25.50 29.90 -169.99 -5.08 20.41 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.72 8.10 -51.93 -0.42 0.29 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.95 8.07 -51.93 -0.42 0.54 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.51 7.85 -51.93 -0.41 1.10 16 29 H 0.05 1.26 6.86 -51.93 -0.36 0.90 16 30 H 0.27 8.26 5.45 -40.82 -0.22 8.04 16 LS Contribution 244.58 15.07 3.69 3.69 Total: -1.00 -30.47 244.58 -6.25 -36.72 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.74 Total: -2.46 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -0.51 Total: -22.77 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.74 Total: -27.02 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.35 Total: -8.56 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.47 -6.25 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.826 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds