Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47104 * 2 1 4 4 C 1.42898 * 114.00038 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.01844 * 28.60779 * 4 3 2 6 6 C 1.54262 * 110.07616 * 267.19126 * 4 3 2 7 7 C 1.54885 * 104.19889 * 264.30326 * 6 4 3 8 8 C 1.54963 * 102.77651 * 322.08214 * 7 6 4 9 9 C 1.53874 * 110.03600 * 150.00022 * 4 3 2 10 10 H 1.09009 * 110.02942 * 0.02562 * 9 4 3 11 11 C 1.50696 * 110.03513 * 238.62238 * 9 4 3 12 12 H 1.07995 * 120.00332 * 0.68234 * 11 9 4 13 13 C 1.37880 * 119.99983 * 180.69069 * 11 9 4 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 H 1.08995 * 109.47192 * 299.99727 * 1 2 3 20 20 H 1.08998 * 109.47143 * 59.99623 * 1 2 3 21 21 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46867 * 240.00512 * 2 1 3 23 23 H 1.08998 * 109.47143 * 120.00377 * 2 1 3 24 24 H 1.09004 * 110.48599 * 22.98361 * 6 4 3 25 25 H 1.09002 * 110.49213 * 145.49104 * 6 4 3 26 26 H 1.09010 * 110.75748 * 80.36765 * 7 6 4 27 27 H 1.08997 * 110.76147 * 203.55516 * 7 6 4 28 28 H 1.08996 * 110.47633 * 279.23372 * 8 7 6 29 29 H 1.09000 * 110.53247 * 156.56814 * 8 7 6 30 30 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8736 0.5933 -0.4913 6 6 3.9537 1.5725 1.4464 7 6 4.1043 3.0964 1.6786 8 6 4.6238 3.6021 0.3090 9 6 3.8572 2.7499 -0.7234 10 1 2.9774 3.2900 -1.0733 11 6 4.7552 2.4169 -1.8868 12 1 4.9956 1.3871 -2.1061 13 6 5.2703 3.4271 -2.6713 14 7 4.9774 4.6812 -2.4045 15 14 6.3840 3.0144 -4.1131 16 1 7.7965 2.9875 -3.6554 17 1 6.0151 1.6834 -4.6586 18 1 6.2261 4.0443 -5.1712 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 3.2332 1.1493 2.1463 25 1 4.9175 1.0726 1.5437 26 1 3.1411 3.5480 1.9164 27 1 4.8287 3.2972 2.4679 28 1 5.6970 3.4325 0.2220 29 1 4.3918 4.6591 0.1788 30 1 4.3987 4.8954 -1.6561 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -93.249396 kcal Electronic energy + Delta-G solvation = -11634.887797 eV Core-core repulsion = 9621.313761 eV Total energy + Delta-G solvation = -2013.574036 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.03603 -37.27186 -34.58699 -31.98883 -29.73650 -28.51886 -25.74108 -23.70887 -21.45767 -21.17044 -19.02184 -17.87856 -16.57682 -16.02824 -15.76753 -15.53098 -14.51340 -14.43121 -13.80161 -13.52164 -13.30766 -12.79356 -12.66802 -12.30597 -12.01877 -11.99360 -11.90074 -11.80559 -11.48658 -11.33438 -10.65827 -10.46132 -10.26958 -8.59277 -6.32407 1.51508 1.60871 1.78073 2.55789 2.90753 3.20595 3.81078 3.90637 4.12986 4.16520 4.33667 4.47305 4.50980 4.74923 4.78056 4.79125 4.85811 4.92051 5.02614 5.11783 5.14357 5.26108 5.34088 5.41823 5.63767 6.03602 6.21520 6.51881 6.65429 7.48184 8.79038 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041378 B = 0.012682 C = 0.010751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.529542 B = 2207.255699 C = 2603.803276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.407 6.407 4 C 0.099 3.901 5 H 0.047 0.953 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.104 4.104 9 C 0.023 3.977 10 H -0.010 1.010 11 C -0.608 4.608 12 H 0.045 0.955 13 C -0.032 4.032 14 N -0.938 5.938 15 Si 1.116 2.884 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.284 1.284 19 H 0.063 0.937 20 H 0.049 0.951 21 H 0.096 0.904 22 H 0.038 0.962 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -8.548 6.349 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.327 6.327 4 C 0.042 3.958 5 H 0.065 0.935 6 C -0.169 4.169 7 C -0.151 4.151 8 C -0.143 4.143 9 C 0.004 3.996 10 H 0.008 0.992 11 C -0.646 4.646 12 H 0.063 0.937 13 C -0.230 4.230 14 N -0.575 5.575 15 Si 0.938 3.062 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.210 1.210 19 H 0.082 0.918 20 H 0.068 0.932 21 H 0.115 0.885 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.830 -7.731 5.125 9.697 hybrid contribution -0.806 -0.538 1.013 1.402 sum -3.636 -8.269 6.138 10.921 Atomic orbital electron populations 1.21738 0.92335 1.03483 1.02463 1.22697 0.96771 0.83573 1.00075 1.87903 1.22073 1.27653 1.95105 1.22823 0.79588 0.97969 0.95460 0.93536 1.22757 1.01280 0.97098 0.95778 1.22457 1.00674 0.95503 0.96421 1.22372 0.98924 0.97663 0.95317 1.19549 0.93794 0.92346 0.93885 0.99178 1.22408 1.32466 0.94736 1.14998 0.93713 1.27253 0.99393 0.92823 1.03539 1.70858 1.36277 1.19557 1.30828 0.82945 0.74848 0.75591 0.72797 1.19643 1.19801 1.20963 0.91832 0.93158 0.88491 0.94354 0.92261 0.90059 0.90476 0.92054 0.90175 0.93866 0.94915 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.05 1.43 6.50 71.98 0.47 1.90 16 3 O -0.41 -17.19 9.89 -148.98 -1.47 -18.66 16 4 C 0.10 4.38 3.03 31.32 0.09 4.47 16 5 H 0.05 2.09 7.03 -2.39 -0.02 2.08 16 6 C -0.13 -4.74 6.57 31.67 0.21 -4.53 16 7 C -0.11 -4.27 6.91 31.91 0.22 -4.05 16 8 C -0.10 -5.07 5.28 31.69 0.17 -4.90 16 9 C 0.02 1.22 2.32 -10.82 -0.03 1.20 16 10 H -0.01 -0.60 7.81 -2.38 -0.02 -0.62 16 11 C -0.61 -35.38 8.37 25.60 0.21 -35.16 16 12 H 0.04 2.56 7.33 -2.91 -0.02 2.54 16 13 C -0.03 -1.86 5.32 84.65 0.45 -1.41 16 14 N -0.94 -58.55 13.41 21.45 0.29 -58.27 16 15 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.04 1.23 8.10 -2.38 -0.02 1.21 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.08 2.53 8.07 -2.38 -0.02 2.51 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.04 2.19 7.85 -2.39 -0.02 2.18 16 29 H 0.03 1.66 6.86 -2.39 -0.02 1.64 16 30 H 0.26 16.54 5.45 -92.71 -0.51 16.03 16 Total: -1.00 -66.73 244.58 4.75 -61.98 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.35 Total: 7.00 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 2.54 Total: -45.34 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.29 Total: -58.27 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.47 Total: -18.66 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -66.73 4.75 -61.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.267 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds