Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.01580 * 29.30294 * 4 3 2 6 6 C 1.54272 * 110.03445 * 267.91102 * 4 3 2 7 7 C 1.54884 * 104.19539 * 217.10405 * 6 4 3 8 8 C 1.54891 * 102.75019 * 37.94368 * 7 6 4 9 9 C 1.53871 * 110.03423 * 150.69176 * 4 3 2 10 10 H 1.08995 * 110.03529 * 238.57489 * 9 4 3 11 11 C 1.50701 * 110.03043 * 0.02562 * 9 4 3 12 12 H 1.08002 * 120.00052 * 359.97438 * 11 9 4 13 13 C 1.37878 * 120.00103 * 180.02562 * 11 9 4 14 14 N 1.31513 * 119.99755 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46986 * 59.99720 * 15 13 11 17 17 H 1.48490 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46889 * 299.99997 * 15 13 11 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 24 24 H 1.09004 * 110.48313 * 335.78633 * 6 4 3 25 25 H 1.09005 * 110.48365 * 98.42727 * 6 4 3 26 26 H 1.09001 * 110.75463 * 156.25650 * 7 6 4 27 27 H 1.09007 * 110.75763 * 279.44370 * 7 6 4 28 28 H 1.08997 * 110.48735 * 80.73302 * 8 7 6 29 29 H 1.09001 * 110.48756 * 203.38206 * 8 7 6 30 30 H 0.96997 * 119.99748 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8735 0.5993 -0.5004 6 6 3.9529 1.5549 1.4492 7 6 5.1329 2.5545 1.3631 8 6 4.6231 3.5977 0.3380 9 6 3.8570 2.7584 -0.7071 10 1 4.5072 2.5276 -1.5509 11 6 2.6407 3.5107 -1.1820 12 1 1.6538 3.1104 -1.0021 13 6 2.7876 4.7095 -1.8470 14 7 3.9893 5.1967 -2.0664 15 14 1.2798 5.6417 -2.4363 16 1 0.4209 5.9797 -1.2730 17 1 1.7050 6.8912 -3.1166 18 1 0.5150 4.7954 -3.3871 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1757 1.9380 2.1105 25 1 4.3021 0.5812 1.7932 26 1 5.3150 3.0213 2.3311 27 1 6.0331 2.0591 0.9993 28 1 3.9542 4.3107 0.8198 29 1 5.4613 4.1148 -0.1290 30 1 4.0927 6.0403 -2.5339 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = -65.751231 kcal Electronic energy + Delta-G solvation = -11723.821241 eV Core-core repulsion = 9711.439614 eV Total energy + Delta-G solvation = -2012.381626 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.10710 -35.25244 -32.27157 -30.56303 -28.01907 -26.41680 -23.76946 -22.24958 -19.74313 -18.93144 -16.71965 -15.18707 -14.90732 -14.75003 -14.03934 -13.63926 -12.73186 -12.32893 -12.26665 -11.92231 -11.40678 -10.95037 -10.88739 -10.75235 -10.45262 -10.37148 -9.96587 -9.73934 -9.54529 -9.17176 -8.54179 -8.50002 -8.21022 -5.84470 -3.82194 3.43615 3.46844 3.51205 4.55144 4.63873 5.43673 5.47992 5.61757 5.73008 5.74335 5.83004 5.86596 6.09963 6.16000 6.32461 6.45019 6.50291 6.59586 6.74197 6.85379 6.95205 7.22837 7.41737 7.72446 7.96042 8.19283 8.21116 8.72011 9.26460 9.80615 11.26624 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.017145 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.045365 B = 1632.779538 C = 2381.150081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.091 3.909 5 H 0.038 0.962 6 C -0.141 4.141 7 C -0.131 4.131 8 C -0.091 4.091 9 C 0.044 3.956 10 H 0.032 0.968 11 C -0.492 4.492 12 H 0.075 0.925 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.291 1.291 18 H -0.279 1.279 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.062 0.938 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -7.598 4.638 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.270 6.270 4 C 0.033 3.967 5 H 0.056 0.944 6 C -0.179 4.179 7 C -0.168 4.168 8 C -0.129 4.129 9 C 0.026 3.974 10 H 0.050 0.950 11 C -0.530 4.530 12 H 0.093 0.907 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.205 1.205 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.786 -7.279 4.546 8.766 hybrid contribution -0.559 0.292 -0.325 0.709 sum -2.344 -6.987 4.221 8.493 Atomic orbital electron populations 1.21695 0.94819 1.00974 1.03005 1.22368 0.95016 0.86700 0.98593 1.88203 1.21747 1.22524 1.94570 1.22926 0.79952 0.99710 0.94096 0.94396 1.22844 0.98595 0.97988 0.98492 1.22544 0.96649 0.98078 0.99578 1.22291 0.99184 0.96354 0.95092 1.19432 0.95802 0.89103 0.93080 0.95032 1.21159 0.93560 1.04082 1.34216 0.90684 1.25000 0.95472 0.97679 0.96405 1.69973 1.21105 1.20140 1.42820 0.86694 0.83610 0.78986 0.78847 1.20446 1.21715 1.20507 0.92251 0.92281 0.91870 0.94932 0.94433 0.91361 0.93717 0.93213 0.92911 0.92687 0.92425 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 37.16 0.38 -1.80 16 2 C 0.05 0.87 6.50 37.16 0.24 1.11 16 3 O -0.35 -7.79 7.63 -35.23 -0.27 -8.06 16 4 C 0.09 1.99 3.35 -25.61 -0.09 1.90 16 5 H 0.04 0.77 7.81 -51.93 -0.41 0.37 16 6 C -0.14 -2.71 6.56 -25.07 -0.16 -2.87 16 7 C -0.13 -2.54 6.91 -24.74 -0.17 -2.71 16 8 C -0.09 -2.19 5.44 -25.01 -0.14 -2.33 16 9 C 0.04 1.14 2.82 -90.60 -0.26 0.89 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.49 -14.05 8.07 -34.44 -0.28 -14.32 16 12 H 0.08 2.18 6.12 -52.49 -0.32 1.86 16 13 C 0.05 1.56 5.33 -17.82 -0.09 1.46 16 14 N -0.90 -26.68 12.44 55.43 0.69 -25.99 16 15 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 1.42 7.85 -51.93 -0.41 1.01 16 29 H 0.06 1.45 7.97 -51.93 -0.41 1.04 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 245.56 15.07 3.70 3.70 Total: -1.00 -29.79 245.56 -6.37 -36.15 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.91 Total: -4.43 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.56 Total: -18.67 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.69 Total: -25.99 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.27 Total: -8.06 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.79 -6.37 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.597 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds