Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.01580 * 29.30294 * 4 3 2 6 6 C 1.54272 * 110.03445 * 267.91102 * 4 3 2 7 7 C 1.54884 * 104.19539 * 217.10405 * 6 4 3 8 8 C 1.54891 * 102.75019 * 37.94368 * 7 6 4 9 9 C 1.53871 * 110.03423 * 150.69176 * 4 3 2 10 10 H 1.08995 * 110.03529 * 238.57489 * 9 4 3 11 11 C 1.50701 * 110.03043 * 0.02562 * 9 4 3 12 12 H 1.08002 * 120.00052 * 359.97438 * 11 9 4 13 13 C 1.37878 * 120.00103 * 180.02562 * 11 9 4 14 14 N 1.31513 * 119.99755 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 119.99990 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46986 * 59.99720 * 15 13 11 17 17 H 1.48490 * 109.46965 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46889 * 299.99997 * 15 13 11 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 24 24 H 1.09004 * 110.48313 * 335.78633 * 6 4 3 25 25 H 1.09005 * 110.48365 * 98.42727 * 6 4 3 26 26 H 1.09001 * 110.75463 * 156.25650 * 7 6 4 27 27 H 1.09007 * 110.75763 * 279.44370 * 7 6 4 28 28 H 1.08997 * 110.48735 * 80.73302 * 8 7 6 29 29 H 1.09001 * 110.48756 * 203.38206 * 8 7 6 30 30 H 0.96997 * 119.99748 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8735 0.5993 -0.5004 6 6 3.9529 1.5549 1.4492 7 6 5.1329 2.5545 1.3631 8 6 4.6231 3.5977 0.3380 9 6 3.8570 2.7584 -0.7071 10 1 4.5072 2.5276 -1.5509 11 6 2.6407 3.5107 -1.1820 12 1 1.6538 3.1104 -1.0021 13 6 2.7876 4.7095 -1.8470 14 7 3.9893 5.1967 -2.0664 15 14 1.2798 5.6417 -2.4363 16 1 0.4209 5.9797 -1.2730 17 1 1.7050 6.8912 -3.1166 18 1 0.5150 4.7954 -3.3871 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1757 1.9380 2.1105 25 1 4.3021 0.5812 1.7932 26 1 5.3150 3.0213 2.3311 27 1 6.0331 2.0591 0.9993 28 1 3.9542 4.3107 0.8198 29 1 5.4613 4.1148 -0.1290 30 1 4.0927 6.0403 -2.5339 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592781.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = -83.573637 kcal Electronic energy + Delta-G solvation = -11724.594078 eV Core-core repulsion = 9711.439614 eV Total energy + Delta-G solvation = -2013.154464 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.78336 -36.91435 -34.38395 -31.90310 -29.95851 -28.11543 -25.83970 -23.55793 -21.39717 -20.81281 -18.62470 -16.95846 -16.82897 -16.24505 -15.90888 -15.22477 -14.33320 -14.23358 -13.75140 -13.34843 -13.16323 -12.82035 -12.67400 -12.40517 -12.23047 -11.86375 -11.63297 -11.56667 -11.37565 -11.05182 -10.62434 -10.41756 -10.07253 -8.04737 -6.08623 1.41077 1.43227 1.50858 2.48687 3.12284 3.26223 4.00098 4.06412 4.27360 4.28998 4.44973 4.55918 4.58517 4.85203 4.95454 4.96809 5.03817 5.09638 5.12988 5.26239 5.34029 5.37980 5.56368 5.73827 5.92860 5.98927 6.41624 6.80487 7.05820 7.57622 9.05423 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.017145 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.045365 B = 1632.779538 C = 2381.150081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.042 3.958 3 O -0.385 6.385 4 C 0.092 3.908 5 H 0.051 0.949 6 C -0.131 4.131 7 C -0.119 4.119 8 C -0.086 4.086 9 C 0.030 3.970 10 H 0.000 1.000 11 C -0.505 4.505 12 H 0.066 0.934 13 C 0.003 3.997 14 N -0.928 5.928 15 Si 0.950 3.050 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.274 1.274 19 H 0.094 0.906 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -8.919 5.690 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 O -0.305 6.305 4 C 0.034 3.966 5 H 0.069 0.931 6 C -0.169 4.169 7 C -0.157 4.157 8 C -0.124 4.124 9 C 0.011 3.989 10 H 0.018 0.982 11 C -0.544 4.544 12 H 0.084 0.916 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.776 3.224 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.199 1.199 19 H 0.113 0.887 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.371 -8.616 5.603 10.547 hybrid contribution -0.388 0.658 -0.681 1.023 sum -2.758 -7.958 4.923 9.756 Atomic orbital electron populations 1.21720 0.93230 1.03040 1.02141 1.22667 0.96378 0.84608 0.99840 1.88132 1.21639 1.25821 1.94861 1.22791 0.80484 0.97703 0.95602 0.93120 1.22768 0.97987 0.99740 0.96358 1.22481 0.97411 0.96703 0.99067 1.22065 0.97666 0.96811 0.95869 1.19466 0.94690 0.91624 0.93078 0.98200 1.21455 0.94227 1.04508 1.34176 0.91554 1.25755 0.98170 0.98673 0.96785 1.70099 1.22846 1.20425 1.43552 0.85737 0.80354 0.77817 0.78458 1.19977 1.21167 1.19897 0.88709 0.92411 0.93461 0.92623 0.94066 0.91872 0.89907 0.90876 0.91078 0.95339 0.94774 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 10.28 71.98 0.74 -3.21 16 2 C 0.04 1.34 6.50 71.98 0.47 1.80 16 3 O -0.38 -16.69 7.63 -148.98 -1.14 -17.83 16 4 C 0.09 3.91 3.35 31.32 0.10 4.01 16 5 H 0.05 1.98 7.81 -2.38 -0.02 1.97 16 6 C -0.13 -4.63 6.56 31.67 0.21 -4.42 16 7 C -0.12 -4.36 6.91 31.88 0.22 -4.14 16 8 C -0.09 -4.19 5.44 31.71 0.17 -4.02 16 9 C 0.03 1.57 2.82 -10.78 -0.03 1.54 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.51 -29.46 8.07 25.60 0.21 -29.26 16 12 H 0.07 3.92 6.12 -2.91 -0.02 3.90 16 13 C 0.00 0.17 5.33 84.66 0.45 0.62 16 14 N -0.93 -56.42 12.44 21.45 0.27 -56.15 16 15 Si 0.95 46.39 29.54 68.60 2.03 48.42 16 16 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 18 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 19 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 20 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 24 H 0.06 2.30 8.08 -2.39 -0.02 2.29 16 25 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.03 1.49 7.85 -2.39 -0.02 1.47 16 29 H 0.03 1.77 7.97 -2.39 -0.02 1.75 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.94 245.56 4.78 -60.16 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.08 Total: 2.46 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 2.54 Total: -37.05 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.27 Total: -56.15 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.14 Total: -17.83 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -64.94 4.78 -60.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592781.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.416 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds