Wall clock time and date at job start Mon Mar 30 2020 02:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48196 * 110.99913 * 2 1 4 4 C 1.53935 * 112.77081 * 191.68426 * 3 2 1 5 5 N 1.44252 * 112.55275 * 318.37603 * 4 3 2 6 6 C 1.48103 * 109.98565 * 93.90359 * 5 4 3 7 7 H 1.09000 * 108.86234 * 40.36652 * 6 5 4 8 8 C 1.50701 * 108.94480 * 159.02125 * 6 5 4 9 9 H 1.08002 * 119.99761 * 122.67083 * 8 6 5 10 10 C 1.37871 * 119.99694 * 302.95646 * 8 6 5 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 6 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 6 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.46139 * 112.18793 * 279.72547 * 6 5 4 17 17 C 1.44253 * 110.99858 * 231.75552 * 2 1 3 18 18 H 1.08991 * 109.47318 * 188.23821 * 1 2 3 19 19 H 1.09001 * 109.47458 * 308.24633 * 1 2 3 20 20 H 1.09006 * 109.46921 * 68.24033 * 1 2 3 21 21 H 1.08999 * 108.82067 * 312.52735 * 3 2 1 22 22 H 1.08999 * 108.82342 * 70.83337 * 3 2 1 23 23 H 1.08998 * 108.86393 * 79.16930 * 4 3 2 24 24 H 1.09000 * 108.86402 * 197.58224 * 4 3 2 25 25 H 1.00901 * 111.00050 * 330.67283 * 5 4 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 27 27 H 1.09000 * 108.99120 * 181.48847 * 16 6 5 28 28 H 1.09002 * 108.99283 * 300.23137 * 16 6 5 29 29 H 1.08996 * 109.60314 * 100.10478 * 17 2 1 30 30 H 1.08992 * 109.61198 * 339.60107 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0001 1.3835 0.0000 4 6 3.5112 1.4417 -0.2874 5 7 4.2450 0.4058 0.3977 6 6 4.4085 -0.7695 -0.4885 7 1 4.6270 -0.4218 -1.4982 8 6 5.5675 -1.5968 0.0049 9 1 5.4187 -2.6349 0.2631 10 6 6.8164 -1.0269 0.1323 11 7 7.8267 -1.7474 0.5682 12 14 7.0738 0.7687 -0.3142 13 1 6.8387 1.6151 0.8831 14 1 8.4655 0.9650 -0.7937 15 1 6.1217 1.1533 -1.3870 16 6 3.2102 -1.6051 -0.5236 17 6 1.9859 -0.8336 -1.0577 18 1 -0.3633 -1.0170 0.1472 19 1 -0.3634 0.6362 0.8071 20 1 -0.3633 0.3810 -0.9545 21 1 1.4750 1.9617 -0.7603 22 1 1.8099 1.8333 0.9745 23 1 3.6702 1.3353 -1.3605 24 1 3.8931 2.4123 0.0289 25 1 3.7875 0.1481 1.2593 26 1 8.7055 -1.3466 0.6574 27 1 3.3961 -2.4650 -1.1673 28 1 2.9945 -1.9587 0.4846 29 1 2.2852 -0.2111 -1.9009 30 1 1.2186 -1.5396 -1.3752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259629171.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:29 Heat of formation + Delta-G solvation = 11.785746 kcal Electronic energy + Delta-G solvation = -11958.508610 eV Core-core repulsion = 9981.781990 eV Total energy + Delta-G solvation = -1976.726619 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.80286 -34.95663 -32.44805 -31.53395 -27.96712 -26.32606 -24.23281 -22.96087 -20.15965 -19.42227 -16.86789 -15.48740 -15.39314 -14.56826 -14.15125 -13.85594 -13.29086 -12.74273 -12.50362 -12.25751 -11.78253 -11.66301 -11.56159 -10.74678 -10.72155 -10.45781 -10.27763 -9.68662 -9.53107 -8.93675 -8.40393 -7.93624 -7.28019 -5.89200 -3.96933 3.62985 3.67998 3.79220 4.13789 4.75868 5.13131 5.23187 5.30939 5.45210 5.52054 5.64498 5.79123 5.82485 5.87462 5.90821 6.05103 6.27059 6.34841 6.45339 6.78933 6.94557 7.27772 7.31944 7.53896 7.83933 8.30530 8.39986 8.74464 9.10312 9.77173 11.20571 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062460 B = 0.014420 C = 0.012469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.179436 B = 1941.274021 C = 2244.993117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.556 5.556 3 C 0.033 3.967 4 C 0.050 3.950 5 N -0.664 5.664 6 C 0.174 3.826 7 H 0.029 0.971 8 C -0.515 4.515 9 H 0.069 0.931 10 C 0.080 3.920 11 N -0.906 5.906 12 Si 0.941 3.059 13 H -0.281 1.281 14 H -0.324 1.324 15 H -0.279 1.279 16 C -0.118 4.118 17 C 0.058 3.942 18 H 0.065 0.935 19 H 0.061 0.939 20 H 0.017 0.983 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.341 0.659 26 H 0.261 0.739 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 5.508 -2.452 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.281 5.281 3 C -0.096 4.096 4 C -0.082 4.082 5 N -0.295 5.295 6 C 0.068 3.932 7 H 0.047 0.953 8 C -0.553 4.553 9 H 0.087 0.913 10 C -0.124 4.124 11 N -0.544 5.544 12 Si 0.775 3.225 13 H -0.207 1.207 14 H -0.254 1.254 15 H -0.205 1.205 16 C -0.158 4.158 17 C -0.070 4.070 18 H 0.084 0.916 19 H 0.080 0.920 20 H 0.036 0.964 21 H 0.044 0.956 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.160 0.840 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.520 5.566 -2.152 12.974 hybrid contribution -1.045 0.968 -0.890 1.679 sum -12.564 6.534 -3.042 14.485 Atomic orbital electron populations 1.22315 0.87739 1.01835 0.99472 1.60514 1.06596 1.12356 1.48620 1.23178 0.97936 0.88002 1.00511 1.21929 0.89043 0.97853 0.99350 1.61261 1.49003 1.11305 1.07942 1.18669 0.93671 0.87967 0.92921 0.95348 1.20971 0.91460 0.97198 1.45684 0.91297 1.25049 0.95542 0.98681 0.93083 1.69986 1.00936 1.37074 1.46370 0.85810 0.73153 0.84755 0.78820 1.20687 1.25400 1.20478 1.21150 0.94180 0.98931 1.01544 1.22014 0.97933 0.95316 0.91742 0.91628 0.91988 0.96441 0.95644 0.91277 0.92684 0.92037 0.83985 0.92993 0.92080 0.91636 0.94728 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.29 60.07 0.56 0.99 16 2 N -0.56 -8.78 4.27 -242.56 -1.04 -9.82 16 3 C 0.03 0.51 5.48 -2.62 -0.01 0.49 16 4 C 0.05 0.92 5.50 -4.75 -0.03 0.89 16 5 N -0.66 -14.60 3.78 -111.96 -0.42 -15.03 16 6 C 0.17 4.11 1.37 -71.46 -0.10 4.01 16 7 H 0.03 0.71 6.51 -51.93 -0.34 0.37 16 8 C -0.51 -14.72 9.28 -34.44 -0.32 -15.04 16 9 H 0.07 2.12 7.96 -52.49 -0.42 1.71 16 10 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 11 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 12 Si 0.94 24.62 25.60 -169.99 -4.35 20.27 16 13 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.32 -8.58 7.11 56.52 0.40 -8.18 16 15 H -0.28 -7.04 6.39 56.52 0.36 -6.68 16 16 C -0.12 -2.39 4.60 -29.34 -0.13 -2.52 16 17 C 0.06 0.97 5.42 -4.59 -0.02 0.95 16 18 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 19 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.03 0.36 8.04 -51.93 -0.42 -0.06 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.05 1.06 6.54 -51.93 -0.34 0.72 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.34 7.35 8.18 -39.29 -0.32 7.03 16 26 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 27 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 28 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 29 H 0.03 0.59 6.96 -51.93 -0.36 0.23 16 30 H 0.06 0.87 7.57 -51.93 -0.39 0.48 16 LS Contribution 231.53 15.07 3.49 3.49 Total: -1.00 -30.88 231.53 -6.42 -37.30 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.72 Total: -0.46 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.16 Total: -7.96 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.68 Total: -52.64 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.35 Total: 20.27 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.88 -6.42 -37.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629171.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.090 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds