Wall clock time and date at job start Mon Mar 30 2020 02:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48196 * 110.99913 * 2 1 4 4 C 1.53935 * 112.77081 * 191.68426 * 3 2 1 5 5 N 1.44252 * 112.55275 * 318.37603 * 4 3 2 6 6 C 1.48103 * 109.98565 * 93.90359 * 5 4 3 7 7 H 1.09000 * 108.86234 * 40.36652 * 6 5 4 8 8 C 1.50701 * 108.94480 * 159.02125 * 6 5 4 9 9 H 1.08002 * 119.99761 * 122.67083 * 8 6 5 10 10 C 1.37871 * 119.99694 * 302.95646 * 8 6 5 11 11 N 1.31523 * 119.99908 * 179.72112 * 10 8 6 12 12 Si 1.86800 * 120.00405 * 359.71709 * 10 8 6 13 13 H 1.48500 * 109.47210 * 90.00069 * 12 10 8 14 14 H 1.48504 * 109.47424 * 210.00300 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00390 * 12 10 8 16 16 C 1.46139 * 112.18793 * 279.72547 * 6 5 4 17 17 C 1.44253 * 110.99858 * 231.75552 * 2 1 3 18 18 H 1.08991 * 109.47318 * 188.23821 * 1 2 3 19 19 H 1.09001 * 109.47458 * 308.24633 * 1 2 3 20 20 H 1.09006 * 109.46921 * 68.24033 * 1 2 3 21 21 H 1.08999 * 108.82067 * 312.52735 * 3 2 1 22 22 H 1.08999 * 108.82342 * 70.83337 * 3 2 1 23 23 H 1.08998 * 108.86393 * 79.16930 * 4 3 2 24 24 H 1.09000 * 108.86402 * 197.58224 * 4 3 2 25 25 H 1.00901 * 111.00050 * 330.67283 * 5 4 3 26 26 H 0.96995 * 120.00181 * 179.97438 * 11 10 8 27 27 H 1.09000 * 108.99120 * 181.48847 * 16 6 5 28 28 H 1.09002 * 108.99283 * 300.23137 * 16 6 5 29 29 H 1.08996 * 109.60314 * 100.10478 * 17 2 1 30 30 H 1.08992 * 109.61198 * 339.60107 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0001 1.3835 0.0000 4 6 3.5112 1.4417 -0.2874 5 7 4.2450 0.4058 0.3977 6 6 4.4085 -0.7695 -0.4885 7 1 4.6270 -0.4218 -1.4982 8 6 5.5675 -1.5968 0.0049 9 1 5.4187 -2.6349 0.2631 10 6 6.8164 -1.0269 0.1323 11 7 7.8267 -1.7474 0.5682 12 14 7.0738 0.7687 -0.3142 13 1 6.8387 1.6151 0.8831 14 1 8.4655 0.9650 -0.7937 15 1 6.1217 1.1533 -1.3870 16 6 3.2102 -1.6051 -0.5236 17 6 1.9859 -0.8336 -1.0577 18 1 -0.3633 -1.0170 0.1472 19 1 -0.3634 0.6362 0.8071 20 1 -0.3633 0.3810 -0.9545 21 1 1.4750 1.9617 -0.7603 22 1 1.8099 1.8333 0.9745 23 1 3.6702 1.3353 -1.3605 24 1 3.8931 2.4123 0.0289 25 1 3.7875 0.1481 1.2593 26 1 8.7055 -1.3466 0.6574 27 1 3.3961 -2.4650 -1.1673 28 1 2.9945 -1.9587 0.4846 29 1 2.2852 -0.2111 -1.9009 30 1 1.2186 -1.5396 -1.3752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259629171.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:29 Heat of formation + Delta-G solvation = -11.762250 kcal Electronic energy + Delta-G solvation = -11959.529727 eV Core-core repulsion = 9981.781990 eV Total energy + Delta-G solvation = -1977.747737 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26606 -36.49448 -34.35580 -33.34175 -29.38582 -28.02822 -25.63716 -24.59298 -21.87608 -20.84912 -18.99155 -16.98421 -16.86268 -16.03670 -15.83124 -15.56016 -14.66171 -14.59021 -14.04440 -13.69983 -13.46706 -13.11070 -12.87741 -12.56429 -12.30832 -12.07140 -11.91608 -11.56251 -11.40939 -10.97535 -10.69348 -9.11744 -8.98259 -8.19273 -6.30790 1.50143 1.59119 1.70124 2.57190 2.95474 3.13513 3.83996 3.94972 4.13453 4.21043 4.37708 4.50774 4.55433 4.63649 4.66414 4.80896 4.94050 4.97372 5.02392 5.16433 5.20257 5.58129 5.71841 6.17850 6.24209 6.30313 6.48508 6.85199 6.91676 7.47152 8.93633 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.062460 B = 0.014420 C = 0.012469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.179436 B = 1941.274021 C = 2244.993117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.574 5.574 3 C 0.041 3.959 4 C 0.047 3.953 5 N -0.678 5.678 6 C 0.186 3.814 7 H 0.021 0.979 8 C -0.519 4.519 9 H 0.029 0.971 10 C 0.023 3.977 11 N -0.954 5.954 12 Si 1.006 2.994 13 H -0.276 1.276 14 H -0.330 1.330 15 H -0.263 1.263 16 C -0.115 4.115 17 C 0.071 3.929 18 H 0.071 0.929 19 H 0.075 0.925 20 H 0.029 0.971 21 H 0.046 0.954 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.343 0.657 26 H 0.262 0.738 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 7.450 -2.975 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.300 5.300 3 C -0.087 4.087 4 C -0.084 4.084 5 N -0.309 5.309 6 C 0.078 3.922 7 H 0.038 0.962 8 C -0.557 4.557 9 H 0.048 0.952 10 C -0.175 4.175 11 N -0.594 5.594 12 Si 0.837 3.163 13 H -0.202 1.202 14 H -0.261 1.261 15 H -0.188 1.188 16 C -0.155 4.155 17 C -0.057 4.057 18 H 0.090 0.910 19 H 0.094 0.906 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.162 0.838 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.742 7.516 -2.679 15.890 hybrid contribution -0.408 0.292 -0.699 0.860 sum -14.149 7.808 -3.378 16.510 Atomic orbital electron populations 1.22365 0.85314 1.02777 1.00668 1.60429 1.08775 1.12504 1.48294 1.23042 0.95518 0.88233 1.01955 1.21983 0.91212 0.96836 0.98395 1.60942 1.50794 1.11144 1.08030 1.18419 0.93138 0.88460 0.92136 0.96153 1.21346 0.93511 0.96286 1.44566 0.95242 1.25911 0.95361 1.02920 0.93321 1.70117 1.01569 1.39054 1.48704 0.84767 0.72898 0.79655 0.78971 1.20212 1.26056 1.18795 1.21020 0.94849 0.98705 1.00924 1.21790 0.96716 0.95593 0.91605 0.91009 0.90628 0.95228 0.93552 0.89930 0.93445 0.90765 0.83834 0.92960 0.92833 0.92985 0.94851 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.29 127.69 1.19 1.94 16 2 N -0.57 -16.12 4.27 -921.32 -3.93 -20.05 16 3 C 0.04 1.10 5.48 86.37 0.47 1.57 16 4 C 0.05 1.57 5.50 87.11 0.48 2.05 16 5 N -0.68 -28.62 3.78 -508.12 -1.92 -30.54 16 6 C 0.19 8.66 1.37 41.83 0.06 8.72 16 7 H 0.02 0.99 6.51 -2.39 -0.02 0.98 16 8 C -0.52 -30.37 9.28 25.60 0.24 -30.13 16 9 H 0.03 1.90 7.96 -2.91 -0.02 1.88 16 10 C 0.02 1.38 5.47 84.65 0.46 1.84 16 11 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16 12 Si 1.01 50.91 25.60 68.60 1.76 52.67 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.33 -16.87 7.11 99.48 0.71 -16.16 16 15 H -0.26 -12.46 6.39 99.48 0.64 -11.83 16 16 C -0.12 -4.57 4.60 28.91 0.13 -4.43 16 17 C 0.07 2.19 5.42 87.22 0.47 2.66 16 18 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 19 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 20 H 0.03 0.55 8.14 -2.38 -0.02 0.54 16 21 H 0.05 1.08 8.04 -2.39 -0.02 1.06 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.67 6.54 -2.39 -0.02 1.65 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.34 14.25 8.18 -89.69 -0.73 13.52 16 26 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 27 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 28 H 0.05 2.18 8.12 -2.39 -0.02 2.16 16 29 H 0.03 1.04 6.96 -2.39 -0.02 1.02 16 30 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 Total: -1.00 -66.91 231.53 0.01 -66.90 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.30 Total: 8.42 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.50 Total: -15.79 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.55 Total: -112.20 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.76 Total: 52.67 kcal Total: -66.91 0.01 -66.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629171.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.138 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds