Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.49009 * 2 1 4 4 C 1.53090 * 109.48278 * 120.03264 * 2 1 3 5 5 C 1.53172 * 109.16414 * 177.59429 * 4 2 1 6 6 C 1.53178 * 109.03534 * 303.01476 * 5 4 2 7 7 H 1.08994 * 109.57780 * 297.04711 * 6 5 4 8 8 C 1.53005 * 109.52416 * 176.88716 * 6 5 4 9 9 C 1.50695 * 109.47088 * 175.31651 * 8 6 5 10 10 H 1.07995 * 120.00496 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99572 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 59.99744 * 13 11 9 15 15 H 1.48503 * 109.47261 * 299.99924 * 13 11 9 16 16 H 1.48500 * 109.47454 * 179.97438 * 13 11 9 17 17 C 1.53093 * 109.16317 * 56.98615 * 6 5 4 18 18 O 1.42905 * 109.41163 * 302.38770 * 17 6 5 19 19 H 1.09003 * 109.47146 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47372 * 300.02419 * 1 2 3 21 21 H 1.09001 * 109.47139 * 60.02528 * 1 2 3 22 22 H 1.09000 * 109.51889 * 297.49740 * 4 2 1 23 23 H 1.09003 * 109.51911 * 57.68159 * 4 2 1 24 24 H 1.09004 * 109.54499 * 183.15324 * 5 4 2 25 25 H 1.08993 * 109.54486 * 62.88612 * 5 4 2 26 26 H 1.09002 * 109.46935 * 55.31617 * 8 6 5 27 27 H 1.08998 * 109.47061 * 295.32410 * 8 6 5 28 28 H 0.97006 * 119.99995 * 359.97438 * 12 11 9 29 29 H 1.09000 * 109.47975 * 62.36972 * 17 6 5 30 30 H 1.08995 * 109.48073 * 182.40906 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2121 6 6 4.0176 -1.4600 -0.0810 7 1 3.6622 -2.4904 -0.0872 8 6 5.5452 -1.4456 -0.1669 9 6 5.9874 -2.2233 -1.3796 10 1 5.2526 -2.6816 -2.0247 11 6 7.3304 -2.3496 -1.6654 12 7 8.2253 -1.7918 -0.8795 13 14 7.8787 -3.3129 -3.1689 14 1 7.3088 -2.6903 -4.3908 15 1 7.4018 -4.7151 -3.0595 16 1 9.3613 -3.2990 -3.2523 17 6 3.4308 -0.7092 -1.2791 18 8 2.0066 -0.6742 -1.1665 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5142 0.8897 21 1 -0.3633 0.5134 -0.8902 22 1 1.7149 -0.1844 2.1398 23 1 1.6442 -1.7375 1.2708 24 1 3.9392 -1.3327 2.0705 25 1 3.9688 0.2435 1.2408 26 1 5.9639 -1.9020 0.7300 27 1 5.8948 -0.4163 -0.2478 28 1 7.9405 -1.2912 -0.0989 29 1 3.8193 0.3091 -1.2958 30 1 3.7100 -1.2202 -2.2005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259724628.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -102.060914 kcal Electronic energy + Delta-G solvation = -11522.202311 eV Core-core repulsion = 9508.246179 eV Total energy + Delta-G solvation = -2013.956132 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50670 -36.47791 -34.49774 -33.79632 -30.12726 -27.30417 -25.81237 -24.13797 -22.44831 -21.03217 -18.89111 -17.34627 -16.79499 -15.86273 -15.63928 -15.40547 -15.05037 -14.49438 -13.82261 -13.52015 -13.43677 -13.10571 -13.03277 -12.51903 -12.23366 -12.04539 -11.95641 -11.76298 -11.60569 -11.16384 -10.57892 -10.57733 -10.28266 -8.69192 -6.39423 1.51851 1.59977 1.79315 2.55856 2.85813 3.15621 3.79825 3.87493 3.94884 4.00899 4.24901 4.38581 4.50964 4.63465 4.76814 4.77944 4.84365 4.96041 4.98541 5.04528 5.14646 5.24163 5.31462 5.35937 5.51335 5.99751 6.17220 6.32449 6.57309 7.41974 8.71440 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.074252 B = 0.009598 C = 0.008823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.003836 B = 2916.660061 C = 3172.875293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.057 0.943 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.102 4.102 7 H 0.053 0.947 8 C 0.019 3.981 9 C -0.614 4.614 10 H 0.052 0.948 11 C -0.039 4.039 12 N -0.939 5.939 13 Si 1.115 2.885 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.283 1.283 17 C 0.086 3.914 18 O -0.401 6.401 19 H 0.060 0.940 20 H 0.095 0.905 21 H 0.062 0.938 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.058 0.942 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.255 0.745 29 H 0.040 0.960 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 3.152 2.316 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.177 4.177 5 C -0.156 4.156 6 C -0.121 4.121 7 H 0.072 0.928 8 C -0.018 4.018 9 C -0.651 4.651 10 H 0.070 0.930 11 C -0.236 4.236 12 N -0.576 5.576 13 Si 0.936 3.064 14 H -0.193 1.193 15 H -0.195 1.195 16 H -0.208 1.208 17 C 0.010 3.990 18 O -0.320 6.320 19 H 0.079 0.921 20 H 0.114 0.886 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.976 2.585 1.350 12.326 hybrid contribution -0.639 0.612 1.219 1.507 sum -12.615 3.197 2.569 13.265 Atomic orbital electron populations 1.21759 0.91062 1.03059 1.03476 1.22388 0.96507 0.94887 0.84861 0.92536 1.22190 0.94453 1.01934 0.99102 1.21684 0.96635 1.00321 0.96926 1.21552 0.95835 0.98949 0.95741 0.92844 1.19122 0.92385 0.94788 0.95521 1.22466 0.94726 1.36158 1.11788 0.92990 1.27411 0.93782 0.97676 1.04778 1.70922 1.36952 1.34069 1.15687 0.82964 0.75851 0.75501 0.72071 1.19311 1.19523 1.20848 1.22361 0.79533 0.98587 0.98549 1.87862 1.21331 1.78546 1.44305 0.92131 0.88649 0.91845 0.88420 0.91504 0.91907 0.92339 0.99324 0.99111 0.93589 0.94178 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.56 71.98 0.69 -2.15 16 2 C 0.07 1.99 3.26 30.62 0.10 2.09 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.14 -3.79 5.42 30.68 0.17 -3.62 16 5 C -0.12 -4.08 5.31 30.71 0.16 -3.91 16 6 C -0.10 -4.38 2.34 -10.70 -0.03 -4.41 16 7 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 8 C 0.02 1.00 3.77 29.85 0.11 1.11 16 9 C -0.61 -35.46 8.44 25.60 0.22 -35.24 16 10 H 0.05 2.93 7.06 -2.91 -0.02 2.91 16 11 C -0.04 -2.31 5.46 84.66 0.46 -1.85 16 12 N -0.94 -59.10 13.65 21.45 0.29 -58.81 16 13 Si 1.12 51.00 29.90 68.60 2.05 53.05 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 C 0.09 3.53 5.89 72.01 0.42 3.95 16 18 O -0.40 -14.62 10.41 -148.98 -1.55 -16.17 16 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 27 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 28 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 3.64 7.03 -2.39 -0.02 3.62 16 Total: -1.00 -65.65 243.49 4.28 -61.37 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.18 Total: 4.59 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.31 Total: -44.03 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.29 Total: -58.81 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.55 Total: -16.17 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -65.65 4.28 -61.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259724628.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.689 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds