Wall clock time and date at job start Mon Mar 30 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08996 * 109.48360 * 305.02625 * 3 2 1 5 5 O 1.42903 * 109.47894 * 65.06001 * 3 2 1 6 6 C 1.42905 * 114.09930 * 181.13843 * 5 3 2 7 7 C 1.53093 * 109.41646 * 298.84560 * 6 5 3 8 8 C 1.53175 * 109.16196 * 57.60128 * 7 6 5 9 9 C 1.53092 * 109.47848 * 185.00044 * 3 2 1 10 10 H 1.08997 * 109.52221 * 62.50735 * 9 3 2 11 11 C 1.50694 * 109.52488 * 302.37834 * 9 3 2 12 12 H 1.07998 * 119.99935 * 0.02562 * 11 9 3 13 13 C 1.37874 * 119.99921 * 179.97438 * 11 9 3 14 14 N 1.31510 * 120.00180 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99943 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47323 * 89.99818 * 15 13 11 17 17 H 1.48503 * 109.47295 * 210.00091 * 15 13 11 18 18 H 1.48503 * 109.47121 * 329.99767 * 15 13 11 19 19 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 23 23 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 24 24 H 1.08999 * 109.48469 * 178.85970 * 6 5 3 25 25 H 1.09002 * 109.48764 * 58.83114 * 6 5 3 26 26 H 1.08997 * 109.51719 * 297.70151 * 7 6 5 27 27 H 1.08989 * 109.57449 * 177.54175 * 7 6 5 28 28 H 1.09008 * 109.54323 * 183.14991 * 8 7 6 29 29 H 1.09002 * 109.54119 * 62.89137 * 8 7 6 30 30 H 0.97005 * 120.00169 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 -0.8414 5 8 1.6633 2.0811 1.2216 6 6 2.0701 3.4478 1.3151 7 6 3.5970 3.5305 1.2421 8 6 4.0734 2.8884 -0.0645 9 6 3.5658 1.4445 -0.1258 10 1 3.8534 0.9974 -1.0773 11 6 4.1655 0.6501 1.0056 12 1 3.5233 0.1889 1.7414 13 6 5.5339 0.5111 1.1009 14 7 6.3158 1.0722 0.2047 15 14 6.2773 -0.4743 2.5030 16 1 6.4108 -1.8953 2.0931 17 1 7.6170 0.0727 2.8367 18 1 5.3950 -0.3836 3.6940 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.7284 3.8649 2.2625 25 1 1.6356 4.0138 0.4911 26 1 4.0314 2.9989 2.0887 27 1 3.9079 4.5748 1.2693 28 1 5.1629 2.8937 -0.0973 29 1 3.6791 3.4498 -0.9115 30 1 7.2786 0.9748 0.2719 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737718.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:51 Heat of formation + Delta-G solvation = -69.643897 kcal Electronic energy + Delta-G solvation = -12029.284462 eV Core-core repulsion = 10016.734038 eV Total energy + Delta-G solvation = -2012.550425 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.49925 -33.60637 -33.15080 -31.16268 -28.91565 -24.92932 -24.24832 -22.15257 -20.32813 -18.93014 -16.12863 -15.17927 -14.91521 -14.46784 -13.68173 -13.27778 -12.98109 -12.54236 -12.38599 -11.75488 -11.24833 -10.96436 -10.88478 -10.72075 -10.53451 -10.30187 -9.94508 -9.65763 -9.60820 -9.38041 -8.57212 -8.34179 -8.04952 -5.91947 -3.94809 3.34101 3.40993 3.45742 4.49113 4.79914 5.38361 5.69524 5.85107 5.91786 5.97255 6.05719 6.15342 6.26681 6.42602 6.49228 6.58309 6.66859 6.73747 6.90099 6.97670 7.17247 7.37758 7.43491 7.70468 7.89046 8.12890 8.31786 8.55670 9.07793 9.67507 11.14425 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.038021 B = 0.016834 C = 0.014038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.255128 B = 1662.885584 C = 1994.084525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.100 3.900 4 H 0.026 0.974 5 O -0.378 6.378 6 C 0.070 3.930 7 C -0.140 4.140 8 C -0.114 4.114 9 C 0.018 3.982 10 H 0.031 0.969 11 C -0.487 4.487 12 H 0.060 0.940 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.886 3.114 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 H 0.055 0.945 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.095 0.905 29 H 0.013 0.987 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 1.828 0.116 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.043 3.957 4 H 0.044 0.956 5 O -0.298 6.298 6 C -0.007 4.007 7 C -0.177 4.177 8 C -0.152 4.152 9 C -0.001 4.001 10 H 0.049 0.951 11 C -0.526 4.526 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.199 1.199 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.032 0.968 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.488 1.744 0.221 6.722 hybrid contribution 0.754 -0.267 0.516 0.952 sum -5.734 1.477 0.737 5.967 Atomic orbital electron populations 1.21780 0.97318 1.00207 1.01237 1.21440 0.93830 0.96060 1.03032 1.22175 0.97027 0.91938 0.84606 0.95643 1.87773 1.78205 1.23980 1.39801 1.22350 0.95278 0.83723 0.99322 1.22004 0.95367 0.98663 1.01708 1.21603 1.04275 0.96551 0.92782 1.19313 0.89283 0.93430 0.98040 0.95066 1.21074 0.91109 1.30377 1.10002 0.92138 1.24950 0.97369 0.95951 0.96024 1.69869 1.03817 1.44778 1.35135 0.86676 0.78478 0.80320 0.83049 1.20856 1.21479 1.19927 0.92567 0.93909 0.93798 0.90421 0.91558 0.90918 0.95302 0.90553 0.94082 0.88675 0.96777 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.81 37.16 0.36 -2.06 16 2 C -0.11 -2.10 5.25 -26.73 -0.14 -2.24 16 3 C 0.10 2.17 2.30 -26.69 -0.06 2.11 16 4 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 5 O -0.38 -8.33 9.63 -35.23 -0.34 -8.67 16 6 C 0.07 1.38 6.84 37.21 0.25 1.63 16 7 C -0.14 -3.01 5.88 -26.59 -0.16 -3.16 16 8 C -0.11 -2.74 5.35 -26.55 -0.14 -2.88 16 9 C 0.02 0.45 2.16 -91.64 -0.20 0.25 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.49 -13.22 6.51 -34.44 -0.22 -13.44 16 12 H 0.06 1.67 6.57 -52.49 -0.34 1.33 16 13 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 14 N -0.90 -25.60 11.33 55.43 0.63 -24.97 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H 0.06 0.94 7.83 -51.93 -0.41 0.53 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 27 H 0.04 0.78 8.14 -51.94 -0.42 0.36 16 28 H 0.09 2.54 6.04 -51.92 -0.31 2.23 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 237.29 15.07 3.58 3.58 Total: -1.00 -28.28 237.29 -6.29 -34.57 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.73 Total: -2.72 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.40 Total: -18.31 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.34 Total: -8.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.28 -6.29 -34.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737718.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.078 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds