Wall clock time and date at job start Mon Mar 30 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08996 * 109.48360 * 305.02625 * 3 2 1 5 5 O 1.42903 * 109.47894 * 65.06001 * 3 2 1 6 6 C 1.42905 * 114.09930 * 181.13843 * 5 3 2 7 7 C 1.53093 * 109.41646 * 298.84560 * 6 5 3 8 8 C 1.53175 * 109.16196 * 57.60128 * 7 6 5 9 9 C 1.53092 * 109.47848 * 185.00044 * 3 2 1 10 10 H 1.08997 * 109.52221 * 62.50735 * 9 3 2 11 11 C 1.50694 * 109.52488 * 302.37834 * 9 3 2 12 12 H 1.07998 * 119.99935 * 0.02562 * 11 9 3 13 13 C 1.37874 * 119.99921 * 179.97438 * 11 9 3 14 14 N 1.31510 * 120.00180 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99943 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47323 * 89.99818 * 15 13 11 17 17 H 1.48503 * 109.47295 * 210.00091 * 15 13 11 18 18 H 1.48503 * 109.47121 * 329.99767 * 15 13 11 19 19 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 23 23 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 24 24 H 1.08999 * 109.48469 * 178.85970 * 6 5 3 25 25 H 1.09002 * 109.48764 * 58.83114 * 6 5 3 26 26 H 1.08997 * 109.51719 * 297.70151 * 7 6 5 27 27 H 1.08989 * 109.57449 * 177.54175 * 7 6 5 28 28 H 1.09008 * 109.54323 * 183.14991 * 8 7 6 29 29 H 1.09002 * 109.54119 * 62.89137 * 8 7 6 30 30 H 0.97005 * 120.00169 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 -0.8414 5 8 1.6633 2.0811 1.2216 6 6 2.0701 3.4478 1.3151 7 6 3.5970 3.5305 1.2421 8 6 4.0734 2.8884 -0.0645 9 6 3.5658 1.4445 -0.1258 10 1 3.8534 0.9974 -1.0773 11 6 4.1655 0.6501 1.0056 12 1 3.5233 0.1889 1.7414 13 6 5.5339 0.5111 1.1009 14 7 6.3158 1.0722 0.2047 15 14 6.2773 -0.4743 2.5030 16 1 6.4108 -1.8953 2.0931 17 1 7.6170 0.0727 2.8367 18 1 5.3950 -0.3836 3.6940 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.7284 3.8649 2.2625 25 1 1.6356 4.0138 0.4911 26 1 4.0314 2.9989 2.0887 27 1 3.9079 4.5748 1.2693 28 1 5.1629 2.8937 -0.0973 29 1 3.6791 3.4498 -0.9115 30 1 7.2786 0.9748 0.2719 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737718.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:50 Heat of formation + Delta-G solvation = -86.268823 kcal Electronic energy + Delta-G solvation = -12030.005373 eV Core-core repulsion = 10016.734038 eV Total energy + Delta-G solvation = -2013.271336 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.23460 -35.54794 -34.72048 -33.11350 -30.59869 -26.96606 -25.87020 -23.88540 -21.94700 -20.82162 -18.08223 -16.99696 -16.69448 -16.34461 -15.32547 -15.12258 -14.47133 -14.32485 -13.94372 -13.62487 -13.03896 -12.82247 -12.64520 -12.44988 -12.32863 -11.95960 -11.67046 -11.49871 -11.37671 -11.18158 -10.48286 -10.39880 -9.86945 -8.03514 -6.12162 1.39617 1.41483 1.51110 2.45667 3.16035 3.27052 4.15399 4.31181 4.34181 4.44240 4.50944 4.58265 4.65147 4.80355 4.85393 5.04698 5.08629 5.14219 5.23840 5.39590 5.48628 5.57218 5.60423 5.69204 5.88053 6.11937 6.42381 6.68566 6.95833 7.52555 9.01463 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.038021 B = 0.016834 C = 0.014038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.255128 B = 1662.885584 C = 1994.084525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.104 3.896 4 H 0.041 0.959 5 O -0.391 6.391 6 C 0.067 3.933 7 C -0.135 4.135 8 C -0.115 4.115 9 C 0.011 3.989 10 H 0.001 0.999 11 C -0.491 4.491 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.943 3.057 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.272 1.272 19 H 0.051 0.949 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 2.163 0.570 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.046 3.954 4 H 0.059 0.941 5 O -0.310 6.310 6 C -0.009 4.009 7 C -0.173 4.173 8 C -0.153 4.153 9 C -0.007 4.007 10 H 0.019 0.981 11 C -0.529 4.529 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.770 3.230 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.197 1.197 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.838 2.078 0.678 8.138 hybrid contribution 1.182 -0.343 0.343 1.278 sum -6.657 1.736 1.021 6.954 Atomic orbital electron populations 1.21681 0.94264 1.01808 1.01747 1.21422 0.96509 0.94564 1.01913 1.22100 0.94560 0.93444 0.85254 0.94147 1.87765 1.78059 1.25370 1.39833 1.22554 0.93560 0.82959 1.01855 1.21934 0.97069 0.99459 0.98795 1.21510 1.02287 0.96498 0.94967 1.19327 0.92025 0.93618 0.95742 0.98093 1.21231 0.91194 1.30280 1.10187 0.93114 1.25622 0.97923 0.97026 0.98137 1.70002 1.03841 1.45892 1.36563 0.85779 0.77630 0.79142 0.80472 1.20316 1.21250 1.19684 0.92965 0.92391 0.91738 0.92701 0.91564 0.88070 0.93016 0.93564 0.91460 0.91957 0.95196 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.81 71.98 0.71 -3.44 16 2 C -0.11 -4.10 5.25 30.60 0.16 -3.94 16 3 C 0.10 4.40 2.30 30.62 0.07 4.47 16 4 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 5 O -0.39 -16.44 9.63 -148.98 -1.43 -17.87 16 6 C 0.07 2.43 6.84 72.01 0.49 2.93 16 7 C -0.13 -5.62 5.88 30.68 0.18 -5.44 16 8 C -0.11 -5.48 5.35 30.71 0.16 -5.31 16 9 C 0.01 0.58 2.16 -11.45 -0.02 0.56 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 11 C -0.49 -26.94 6.51 25.60 0.17 -26.78 16 12 H 0.05 2.84 6.57 -2.91 -0.02 2.82 16 13 C 0.01 0.56 5.30 84.65 0.45 1.01 16 14 N -0.92 -53.73 11.33 21.45 0.24 -53.49 16 15 Si 0.94 44.59 29.54 68.60 2.03 46.61 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H 0.05 1.61 7.83 -2.39 -0.02 1.59 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 22 H 0.05 2.33 6.66 -2.39 -0.02 2.32 16 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.18 7.39 -2.39 -0.02 2.17 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 3.39 6.04 -2.38 -0.01 3.38 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -60.16 237.29 4.29 -55.87 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.09 Total: 4.82 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 2.37 Total: -35.94 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.24 Total: -53.49 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.43 Total: -17.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -60.16 4.29 -55.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737718.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.403 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds