Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.09002 * 109.47744 * 54.97710 * 3 2 1 5 5 O 1.42901 * 109.48984 * 294.95254 * 3 2 1 6 6 C 1.42900 * 114.09512 * 178.85167 * 5 3 2 7 7 C 1.53092 * 109.41672 * 61.15858 * 6 5 3 8 8 C 1.53189 * 109.20928 * 302.42253 * 7 6 5 9 9 C 1.53084 * 109.48060 * 175.00075 * 3 2 1 10 10 H 1.09003 * 109.52535 * 57.63581 * 9 3 2 11 11 C 1.50706 * 109.52511 * 297.51022 * 9 3 2 12 12 H 1.08000 * 119.99302 * 0.12728 * 11 9 3 13 13 C 1.37871 * 120.00436 * 179.85261 * 11 9 3 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 H 1.08996 * 109.46999 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.46805 * 299.99926 * 1 2 3 21 21 H 1.09007 * 109.47280 * 59.99854 * 1 2 3 22 22 H 1.09005 * 109.47264 * 240.00199 * 2 1 3 23 23 H 1.08997 * 109.47324 * 120.00188 * 2 1 3 24 24 H 1.09009 * 109.47935 * 181.13834 * 6 5 3 25 25 H 1.09003 * 109.48548 * 301.15835 * 6 5 3 26 26 H 1.08999 * 109.52691 * 62.29606 * 7 6 5 27 27 H 1.09004 * 109.52505 * 182.42612 * 7 6 5 28 28 H 1.08995 * 109.49554 * 297.04932 * 8 7 6 29 29 H 1.09002 * 109.59158 * 176.78127 * 8 7 6 30 30 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 0.8416 5 8 1.6632 2.0815 -1.2214 6 6 2.0699 3.4482 -1.3145 7 6 3.5969 3.5309 -1.2416 8 6 4.0747 2.8880 0.0642 9 6 3.5657 1.4446 0.1258 10 1 3.9995 0.8702 -0.6928 11 6 3.9635 0.8261 1.4412 12 1 3.2046 0.4651 2.1195 13 6 5.2964 0.7158 1.7762 14 7 6.2207 1.1500 0.9475 15 14 5.7895 -0.0515 3.4064 16 1 5.9685 -1.5152 3.2305 17 1 7.0645 0.5509 3.8714 18 1 4.7271 0.1998 4.4131 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.7281 3.8655 -2.2617 25 1 1.6353 4.0139 -0.4903 26 1 4.0313 2.9996 -2.0883 27 1 3.9069 4.5756 -1.2690 28 1 3.6814 3.4498 0.9114 29 1 5.1642 2.8922 0.0964 30 1 7.1585 1.0721 1.1829 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = -74.386749 kcal Electronic energy + Delta-G solvation = -11865.659012 eV Core-core repulsion = 9852.902922 eV Total energy + Delta-G solvation = -2012.756090 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.51662 -33.81673 -33.15630 -31.35350 -29.00919 -25.06803 -24.26597 -21.85680 -20.33108 -19.03534 -16.54995 -15.53929 -14.85303 -14.39446 -13.58860 -13.31124 -12.97466 -12.65161 -12.48904 -11.97012 -11.22612 -11.08151 -10.87134 -10.68563 -10.55445 -10.35438 -10.10047 -9.85718 -9.74306 -9.19807 -8.78478 -8.40994 -8.13370 -5.99126 -4.05636 3.29711 3.36634 3.39435 4.41343 4.69667 5.30347 5.66944 5.79757 5.84344 5.90917 5.97523 6.00442 6.26095 6.37510 6.50504 6.57318 6.62333 6.67300 6.87808 6.95753 7.08708 7.21167 7.42244 7.71466 7.89837 8.02373 8.19075 8.48866 8.97713 9.58487 11.06868 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039957 B = 0.015454 C = 0.011782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.587111 B = 1811.392204 C = 2375.835900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.096 3.904 4 H 0.041 0.959 5 O -0.395 6.395 6 C 0.069 3.931 7 C -0.157 4.157 8 C -0.112 4.112 9 C 0.025 3.975 10 H 0.033 0.967 11 C -0.511 4.511 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 H 0.043 0.957 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 1.782 -1.769 6.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.039 3.961 4 H 0.059 0.941 5 O -0.315 6.315 6 C -0.008 4.008 7 C -0.195 4.195 8 C -0.150 4.150 9 C 0.007 3.993 10 H 0.051 0.949 11 C -0.550 4.550 12 H 0.076 0.924 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.166 1.697 -1.922 6.678 hybrid contribution 0.605 -0.157 1.091 1.258 sum -5.561 1.540 -0.830 5.830 Atomic orbital electron populations 1.21766 0.97197 1.00229 1.01290 1.21475 0.94118 0.95910 1.02934 1.22322 0.97386 0.92079 0.84315 0.94115 1.87759 1.78943 1.24148 1.40635 1.22374 0.94845 0.83819 0.99806 1.22279 0.95909 0.99922 1.01354 1.21673 1.03956 0.96979 0.92418 1.19234 0.89106 0.93346 0.97658 0.94920 1.21110 0.91827 1.39127 1.02906 0.92442 1.24959 0.96688 0.95431 0.96835 1.69896 1.00351 1.46712 1.35851 0.86626 0.77973 0.79443 0.84167 1.20678 1.21292 1.19919 0.93781 0.93581 0.92799 0.92187 0.89808 0.90782 0.94531 0.92203 0.93109 0.94738 0.88982 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.81 37.16 0.36 -2.08 16 2 C -0.11 -2.13 5.50 -26.73 -0.15 -2.28 16 3 C 0.10 2.11 2.10 -26.68 -0.06 2.06 16 4 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 5 O -0.39 -8.36 9.94 -35.23 -0.35 -8.71 16 6 C 0.07 1.27 6.84 37.21 0.25 1.53 16 7 C -0.16 -3.14 6.13 -26.59 -0.16 -3.31 16 8 C -0.11 -2.70 5.05 -26.54 -0.13 -2.84 16 9 C 0.03 0.64 1.80 -91.63 -0.16 0.47 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.51 -13.86 7.78 -34.44 -0.27 -14.13 16 12 H 0.06 1.52 6.90 -52.49 -0.36 1.16 16 13 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 14 N -0.89 -25.42 11.39 55.43 0.63 -24.78 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.08 1.73 6.65 -51.93 -0.35 1.38 16 24 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 2.46 6.21 -51.93 -0.32 2.13 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 239.83 15.07 3.61 3.61 Total: -1.00 -28.17 239.83 -6.33 -34.50 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.80 Total: -1.80 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.41 Total: -18.95 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.78 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.35 Total: -8.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.17 -6.33 -34.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.882 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds