Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.09002 * 109.47744 * 54.97710 * 3 2 1 5 5 O 1.42901 * 109.48984 * 294.95254 * 3 2 1 6 6 C 1.42900 * 114.09512 * 178.85167 * 5 3 2 7 7 C 1.53092 * 109.41672 * 61.15858 * 6 5 3 8 8 C 1.53189 * 109.20928 * 302.42253 * 7 6 5 9 9 C 1.53084 * 109.48060 * 175.00075 * 3 2 1 10 10 H 1.09003 * 109.52535 * 57.63581 * 9 3 2 11 11 C 1.50706 * 109.52511 * 297.51022 * 9 3 2 12 12 H 1.08000 * 119.99302 * 0.12728 * 11 9 3 13 13 C 1.37871 * 120.00436 * 179.85261 * 11 9 3 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 H 1.08996 * 109.46999 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.46805 * 299.99926 * 1 2 3 21 21 H 1.09007 * 109.47280 * 59.99854 * 1 2 3 22 22 H 1.09005 * 109.47264 * 240.00199 * 2 1 3 23 23 H 1.08997 * 109.47324 * 120.00188 * 2 1 3 24 24 H 1.09009 * 109.47935 * 181.13834 * 6 5 3 25 25 H 1.09003 * 109.48548 * 301.15835 * 6 5 3 26 26 H 1.08999 * 109.52691 * 62.29606 * 7 6 5 27 27 H 1.09004 * 109.52505 * 182.42612 * 7 6 5 28 28 H 1.08995 * 109.49554 * 297.04932 * 8 7 6 29 29 H 1.09002 * 109.59158 * 176.78127 * 8 7 6 30 30 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9818 0.8416 5 8 1.6632 2.0815 -1.2214 6 6 2.0699 3.4482 -1.3145 7 6 3.5969 3.5309 -1.2416 8 6 4.0747 2.8880 0.0642 9 6 3.5657 1.4446 0.1258 10 1 3.9995 0.8702 -0.6928 11 6 3.9635 0.8261 1.4412 12 1 3.2046 0.4651 2.1195 13 6 5.2964 0.7158 1.7762 14 7 6.2207 1.1500 0.9475 15 14 5.7895 -0.0515 3.4064 16 1 5.9685 -1.5152 3.2305 17 1 7.0645 0.5509 3.8714 18 1 4.7271 0.1998 4.4131 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.7281 3.8655 -2.2617 25 1 1.6353 4.0139 -0.4903 26 1 4.0313 2.9996 -2.0883 27 1 3.9069 4.5756 -1.2690 28 1 3.6814 3.4498 0.9114 29 1 5.1642 2.8922 0.0964 30 1 7.1585 1.0721 1.1829 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737721.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = -90.989273 kcal Electronic energy + Delta-G solvation = -11866.378952 eV Core-core repulsion = 9852.902922 eV Total energy + Delta-G solvation = -2013.476030 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.23272 -35.73499 -34.75675 -33.26809 -30.70774 -27.02846 -25.90204 -23.61791 -21.97093 -20.86628 -18.59780 -17.24326 -16.67019 -16.17302 -15.28841 -15.05642 -14.48623 -14.42968 -14.03557 -13.82814 -12.97294 -12.90564 -12.66858 -12.40970 -12.30164 -11.97199 -11.78730 -11.71878 -11.51456 -10.91591 -10.77119 -10.44327 -9.96662 -8.08891 -6.22935 1.41333 1.42012 1.52039 2.42365 3.09287 3.18524 4.11743 4.20046 4.28680 4.36818 4.48431 4.50226 4.64423 4.77856 4.82404 5.00117 5.10416 5.16676 5.23247 5.28090 5.34410 5.51176 5.56586 5.63509 5.90978 6.05789 6.24437 6.59150 6.89131 7.44568 8.96022 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.039957 B = 0.015454 C = 0.011782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.587111 B = 1811.392204 C = 2375.835900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.103 3.897 4 H 0.041 0.959 5 O -0.401 6.401 6 C 0.064 3.936 7 C -0.151 4.151 8 C -0.111 4.111 9 C 0.022 3.978 10 H -0.008 1.008 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.919 5.919 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.265 1.265 19 H 0.066 0.934 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.630 2.072 -1.418 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.046 3.954 4 H 0.059 0.941 5 O -0.321 6.321 6 C -0.012 4.012 7 C -0.188 4.188 8 C -0.149 4.149 9 C 0.003 3.997 10 H 0.010 0.990 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.187 4.187 14 N -0.559 5.559 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.190 1.190 19 H 0.085 0.915 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.549 1.990 -1.575 7.965 hybrid contribution 1.056 -0.218 0.942 1.432 sum -6.493 1.772 -0.633 6.760 Atomic orbital electron populations 1.21674 0.94100 1.01934 1.01749 1.21450 0.96824 0.94328 1.01892 1.22147 0.94831 0.93545 0.84870 0.94125 1.87753 1.78768 1.25631 1.39978 1.22628 0.93412 0.82788 1.02385 1.22210 0.97351 1.00953 0.98326 1.21528 1.01910 0.96734 0.94705 1.19211 0.91613 0.93374 0.95470 0.98979 1.21444 0.92148 1.39128 1.03642 0.92216 1.25758 0.96776 0.95983 1.00198 1.70046 1.00523 1.47749 1.37594 0.85609 0.77660 0.78559 0.80179 1.20192 1.21128 1.18964 0.91524 0.92777 0.92601 0.93155 0.90968 0.87080 0.93183 0.93312 0.90315 0.95054 0.92223 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.81 71.98 0.71 -3.51 16 2 C -0.11 -4.21 5.50 30.60 0.17 -4.04 16 3 C 0.10 4.49 2.10 30.62 0.06 4.56 16 4 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 5 O -0.40 -16.30 9.94 -148.98 -1.48 -17.79 16 6 C 0.06 2.21 6.84 72.01 0.49 2.71 16 7 C -0.15 -5.86 6.13 30.69 0.19 -5.67 16 8 C -0.11 -5.39 5.05 30.72 0.16 -5.23 16 9 C 0.02 1.14 1.80 -11.45 -0.02 1.12 16 10 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 11 C -0.53 -28.85 7.78 25.60 0.20 -28.65 16 12 H 0.06 3.17 6.90 -2.91 -0.02 3.15 16 13 C 0.01 0.62 5.31 84.65 0.45 1.07 16 14 N -0.92 -53.84 11.39 21.45 0.24 -53.60 16 15 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.05 1.69 7.83 -2.38 -0.02 1.67 16 22 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 23 H 0.07 2.96 6.65 -2.39 -0.02 2.94 16 24 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 3.28 6.21 -2.39 -0.01 3.26 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -60.53 239.83 4.28 -56.25 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.09 Total: 7.20 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 2.40 Total: -37.66 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.24 Total: -53.60 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.48 Total: -17.79 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -60.53 4.28 -56.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737721.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.742 kcal (2) G-P(sol) polarization free energy of solvation -60.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds