Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.48875 * 2 1 4 4 C 1.53098 * 109.47826 * 239.97593 * 2 1 3 5 5 C 1.53177 * 109.21356 * 182.37378 * 4 2 1 6 6 C 1.53311 * 108.96735 * 56.95427 * 5 4 2 7 7 H 1.08999 * 109.55790 * 62.99958 * 6 5 4 8 8 C 1.50694 * 109.51122 * 183.14028 * 6 5 4 9 9 H 1.07998 * 120.00331 * 119.71412 * 8 6 5 10 10 C 1.37878 * 120.00245 * 299.71555 * 8 6 5 11 11 N 1.31523 * 119.99437 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00518 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46837 * 89.99943 * 12 10 8 14 14 H 1.48495 * 109.47234 * 209.99860 * 12 10 8 15 15 H 1.48500 * 109.46835 * 330.00225 * 12 10 8 16 16 C 1.53100 * 109.19441 * 303.05955 * 6 5 4 17 17 H 1.09002 * 109.47233 * 297.62202 * 16 6 5 18 18 C 1.53003 * 109.47879 * 177.59162 * 16 6 5 19 19 O 1.42899 * 109.48189 * 120.03467 * 2 1 3 20 20 H 1.09000 * 109.47619 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47615 * 300.02537 * 1 2 3 22 22 H 1.09006 * 109.47613 * 60.02703 * 1 2 3 23 23 H 1.09002 * 109.52244 * 302.31317 * 4 2 1 24 24 H 1.09004 * 109.52508 * 62.43846 * 4 2 1 25 25 H 1.09001 * 109.54414 * 176.87772 * 5 4 2 26 26 H 1.09002 * 109.54680 * 297.14715 * 5 4 2 27 27 H 0.96996 * 119.99512 * 179.97438 * 11 10 8 28 28 H 1.08992 * 109.46902 * 300.05078 * 18 16 6 29 29 H 1.08998 * 109.47506 * 60.05492 * 18 16 6 30 30 H 1.09004 * 109.46466 * 180.02562 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2497 5 6 3.5710 -0.7707 -1.2139 6 6 4.0176 -1.4601 0.0806 7 1 3.6621 -2.4904 0.0867 8 6 5.5221 -1.4458 0.1652 9 1 6.0119 -0.9510 0.9908 10 6 6.2734 -2.0645 -0.8114 11 7 5.6769 -2.6675 -1.8166 12 14 8.1384 -2.0463 -0.7070 13 1 8.6031 -3.2341 0.0535 14 1 8.7112 -2.0803 -2.0766 15 1 8.5833 -0.8102 -0.0148 16 6 3.4306 -0.7094 1.2789 17 1 3.8192 0.3089 1.2956 18 6 3.8228 -1.4268 2.5722 19 8 2.0065 -0.6743 1.1663 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5142 0.8897 22 1 -0.3634 0.5134 -0.8902 23 1 1.6441 -1.7374 -1.2711 24 1 1.7137 -0.1848 -2.1400 25 1 3.9382 -1.3321 -2.0731 26 1 3.9688 0.2437 -1.2425 27 1 6.2054 -3.1024 -2.5039 28 1 3.4345 -2.4450 2.5549 29 1 4.9090 -1.4535 2.6580 30 1 3.4044 -0.8924 3.4252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259737837.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -72.536184 kcal Electronic energy + Delta-G solvation = -11857.869713 eV Core-core repulsion = 9845.193870 eV Total energy + Delta-G solvation = -2012.675844 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.60512 -33.93912 -32.80626 -31.16641 -28.81012 -26.40975 -23.58061 -21.76559 -20.69816 -19.10500 -16.50630 -15.64793 -14.65934 -14.14538 -13.76378 -13.30760 -13.01514 -12.19995 -11.95729 -11.71530 -11.61714 -11.26961 -11.05983 -10.93843 -10.71189 -10.47621 -10.16268 -9.80052 -9.73913 -9.25419 -8.79556 -8.40908 -8.11820 -5.98851 -4.05280 3.29750 3.36631 3.39412 4.40127 4.56295 5.30590 5.46782 5.65020 5.82553 5.97993 6.05182 6.15636 6.26603 6.33392 6.35544 6.39553 6.67491 6.71552 6.78881 6.97321 7.04543 7.20158 7.43190 7.71908 7.91892 8.03052 8.20293 8.49789 8.98027 9.58712 11.07165 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058601 B = 0.012987 C = 0.011208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.694669 B = 2155.460720 C = 2497.653687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 H 0.045 0.955 4 C -0.149 4.149 5 C -0.113 4.113 6 C 0.026 3.974 7 H 0.033 0.967 8 C -0.511 4.511 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.090 3.910 17 H 0.040 0.960 18 C -0.128 4.128 19 O -0.394 6.394 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 3.891 2.392 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 H 0.063 0.937 4 C -0.187 4.187 5 C -0.151 4.151 6 C 0.008 3.992 7 H 0.051 0.949 8 C -0.550 4.550 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.528 5.528 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.034 3.966 17 H 0.058 0.942 18 C -0.186 4.186 19 O -0.315 6.315 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.576 3.705 2.365 7.101 hybrid contribution 1.239 0.093 -0.321 1.283 sum -4.338 3.798 2.044 6.117 Atomic orbital electron populations 1.21758 0.94620 1.02254 1.01240 1.21916 0.93482 0.94746 0.86643 0.93744 1.22298 0.99898 1.00222 0.96248 1.21706 0.90335 0.99714 1.03307 1.19260 0.95198 0.95267 0.89513 0.94907 1.21112 0.90763 1.34733 1.08352 0.92472 1.24966 0.98377 0.95217 0.95390 1.69900 1.35053 1.35931 1.11921 0.86621 0.85897 0.78406 0.77240 1.20692 1.21288 1.19935 1.22281 0.78809 0.98200 0.97333 0.94173 1.21641 1.01804 1.00013 0.95095 1.87754 1.23127 1.78143 1.42426 0.92224 0.92709 0.91896 0.92187 0.93150 0.88950 0.94754 0.93050 0.92821 0.90586 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.56 37.15 0.36 -1.77 16 2 C 0.09 1.70 3.27 -26.69 -0.09 1.61 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.15 -3.01 5.41 -26.59 -0.14 -3.16 16 5 C -0.11 -2.72 5.05 -26.48 -0.13 -2.86 16 6 C 0.03 0.67 1.80 -91.56 -0.17 0.50 16 7 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.51 -13.92 7.85 -34.44 -0.27 -14.19 16 9 H 0.06 1.52 6.89 -52.49 -0.36 1.16 16 10 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 11 N -0.89 -25.47 11.38 55.43 0.63 -24.84 16 12 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.09 2.03 2.72 -26.68 -0.07 1.96 16 17 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.13 -2.59 9.34 37.16 0.35 -2.24 16 19 O -0.39 -8.47 10.05 -35.23 -0.35 -8.82 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 2.47 6.21 -51.93 -0.32 2.15 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.54 6.79 -51.93 -0.35 1.18 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 240.36 15.07 3.62 3.62 Total: -1.00 -28.43 240.36 -6.21 -34.64 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.82 Total: -2.24 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.26 Total: -18.54 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.63 Total: -24.84 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.35 Total: -8.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.43 -6.21 -34.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737837.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.898 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds