Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.48875 * 2 1 4 4 C 1.53098 * 109.47826 * 239.97593 * 2 1 3 5 5 C 1.53177 * 109.21356 * 182.37378 * 4 2 1 6 6 C 1.53311 * 108.96735 * 56.95427 * 5 4 2 7 7 H 1.08999 * 109.55790 * 62.99958 * 6 5 4 8 8 C 1.50694 * 109.51122 * 183.14028 * 6 5 4 9 9 H 1.07998 * 120.00331 * 119.71412 * 8 6 5 10 10 C 1.37878 * 120.00245 * 299.71555 * 8 6 5 11 11 N 1.31523 * 119.99437 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00518 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46837 * 89.99943 * 12 10 8 14 14 H 1.48495 * 109.47234 * 209.99860 * 12 10 8 15 15 H 1.48500 * 109.46835 * 330.00225 * 12 10 8 16 16 C 1.53100 * 109.19441 * 303.05955 * 6 5 4 17 17 H 1.09002 * 109.47233 * 297.62202 * 16 6 5 18 18 C 1.53003 * 109.47879 * 177.59162 * 16 6 5 19 19 O 1.42899 * 109.48189 * 120.03467 * 2 1 3 20 20 H 1.09000 * 109.47619 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47615 * 300.02537 * 1 2 3 22 22 H 1.09006 * 109.47613 * 60.02703 * 1 2 3 23 23 H 1.09002 * 109.52244 * 302.31317 * 4 2 1 24 24 H 1.09004 * 109.52508 * 62.43846 * 4 2 1 25 25 H 1.09001 * 109.54414 * 176.87772 * 5 4 2 26 26 H 1.09002 * 109.54680 * 297.14715 * 5 4 2 27 27 H 0.96996 * 119.99512 * 179.97438 * 11 10 8 28 28 H 1.08992 * 109.46902 * 300.05078 * 18 16 6 29 29 H 1.08998 * 109.47506 * 60.05492 * 18 16 6 30 30 H 1.09004 * 109.46466 * 180.02562 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2497 5 6 3.5710 -0.7707 -1.2139 6 6 4.0176 -1.4601 0.0806 7 1 3.6621 -2.4904 0.0867 8 6 5.5221 -1.4458 0.1652 9 1 6.0119 -0.9510 0.9908 10 6 6.2734 -2.0645 -0.8114 11 7 5.6769 -2.6675 -1.8166 12 14 8.1384 -2.0463 -0.7070 13 1 8.6031 -3.2341 0.0535 14 1 8.7112 -2.0803 -2.0766 15 1 8.5833 -0.8102 -0.0148 16 6 3.4306 -0.7094 1.2789 17 1 3.8192 0.3089 1.2956 18 6 3.8228 -1.4268 2.5722 19 8 2.0065 -0.6743 1.1663 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5142 0.8897 22 1 -0.3634 0.5134 -0.8902 23 1 1.6441 -1.7374 -1.2711 24 1 1.7137 -0.1848 -2.1400 25 1 3.9382 -1.3321 -2.0731 26 1 3.9688 0.2437 -1.2425 27 1 6.2054 -3.1024 -2.5039 28 1 3.4345 -2.4450 2.5549 29 1 4.9090 -1.4535 2.6580 30 1 3.4044 -0.8924 3.4252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737837.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -89.403151 kcal Electronic energy + Delta-G solvation = -11858.601120 eV Core-core repulsion = 9845.193870 eV Total energy + Delta-G solvation = -2013.407250 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.31599 -35.85876 -34.42678 -33.14761 -30.31876 -28.30585 -25.43155 -23.48010 -22.34921 -20.93107 -18.57523 -17.32524 -16.60801 -15.87120 -15.41729 -14.98328 -14.77443 -14.01923 -13.41556 -13.36520 -13.25109 -12.81813 -12.77100 -12.69321 -12.59105 -12.29433 -11.90614 -11.65945 -11.53258 -10.99960 -10.79680 -10.46105 -9.95798 -8.09053 -6.23162 1.41380 1.41989 1.52081 2.42155 2.97837 3.18006 4.01510 4.17920 4.27203 4.33696 4.49696 4.58538 4.66604 4.80007 4.84817 4.92047 5.03087 5.13237 5.22401 5.29222 5.35939 5.39840 5.51711 5.62664 5.90809 6.04788 6.24724 6.60439 6.88846 7.44285 8.95916 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058601 B = 0.012987 C = 0.011208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.694669 B = 2155.460720 C = 2497.653687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.082 3.918 3 H 0.053 0.947 4 C -0.142 4.142 5 C -0.110 4.110 6 C 0.024 3.976 7 H -0.007 1.007 8 C -0.526 4.526 9 H 0.060 0.940 10 C 0.011 3.989 11 N -0.919 5.919 12 Si 0.955 3.045 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.094 3.906 17 H 0.042 0.958 18 C -0.124 4.124 19 O -0.401 6.401 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 4.980 2.986 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.024 3.976 3 H 0.071 0.929 4 C -0.180 4.180 5 C -0.148 4.148 6 C 0.005 3.995 7 H 0.011 0.989 8 C -0.564 4.564 9 H 0.078 0.922 10 C -0.188 4.188 11 N -0.559 5.559 12 Si 0.781 3.219 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.190 1.190 16 C 0.037 3.963 17 H 0.060 0.940 18 C -0.181 4.181 19 O -0.322 6.322 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.966 4.801 2.968 8.213 hybrid contribution 1.326 -0.246 -0.533 1.450 sum -4.641 4.555 2.436 6.944 Atomic orbital electron populations 1.21742 0.91231 1.02760 1.03345 1.22207 0.96106 0.94461 0.84798 0.92903 1.22227 0.96764 1.00375 0.98615 1.21556 0.93386 0.98530 1.01367 1.19223 0.94759 0.93635 0.91848 0.98919 1.21449 0.91937 1.34649 1.08405 0.92150 1.25772 1.02967 0.94943 0.95080 1.70050 1.36638 1.36635 1.12553 0.85594 0.80361 0.78715 0.77236 1.20192 1.21119 1.18976 1.22148 0.79486 0.97823 0.96826 0.94050 1.21596 1.01625 0.99761 0.95134 1.87756 1.22172 1.78632 1.43638 0.92532 0.91290 0.89154 0.93350 0.90441 0.92117 0.95108 0.93124 0.93539 0.91040 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.56 71.98 0.69 -2.89 16 2 C 0.08 2.91 3.27 30.62 0.10 3.01 16 3 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.14 -5.63 5.41 30.69 0.17 -5.46 16 5 C -0.11 -5.41 5.05 30.76 0.16 -5.25 16 6 C 0.02 1.25 1.80 -11.40 -0.02 1.23 16 7 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 8 C -0.53 -28.95 7.85 25.60 0.20 -28.74 16 9 H 0.06 3.20 6.89 -2.91 -0.02 3.18 16 10 C 0.01 0.60 5.31 84.65 0.45 1.05 16 11 N -0.92 -53.83 11.38 21.45 0.24 -53.59 16 12 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 16 C 0.09 4.17 2.72 30.63 0.08 4.25 16 17 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 18 C -0.12 -4.88 9.34 71.98 0.67 -4.21 16 19 O -0.40 -16.70 10.05 -148.98 -1.50 -18.19 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 25 H 0.06 3.35 6.21 -2.39 -0.01 3.33 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.84 6.79 -2.39 -0.02 2.82 16 30 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -60.87 240.36 4.35 -56.52 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.09 Total: 6.66 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 2.50 Total: -37.01 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.24 Total: -53.59 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.50 Total: -18.19 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -60.87 4.35 -56.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737837.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.885 kcal (2) G-P(sol) polarization free energy of solvation -60.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds