Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48688 * 2 1 4 4 N 1.46956 * 109.49237 * 239.95223 * 2 1 3 5 5 C 1.46952 * 110.88222 * 180.69133 * 4 2 1 6 6 C 1.53049 * 109.36356 * 59.31687 * 5 4 2 7 7 N 1.46956 * 109.36700 * 301.60203 * 6 5 4 8 8 C 1.46904 * 111.00042 * 183.18895 * 7 6 5 9 9 C 1.46952 * 110.88222 * 59.31891 * 7 6 5 10 10 H 1.09005 * 109.49037 * 60.64656 * 9 7 6 11 11 C 1.50702 * 109.49211 * 180.71267 * 9 7 6 12 12 H 1.07999 * 119.99392 * 59.51685 * 11 9 7 13 13 C 1.37872 * 120.00053 * 239.52255 * 11 9 7 14 14 N 1.31517 * 120.00221 * 173.59194 * 13 11 9 15 15 Si 1.86802 * 119.99996 * 353.58544 * 13 11 9 16 16 H 1.48499 * 109.46824 * 84.92332 * 15 13 11 17 17 H 1.48506 * 109.47003 * 204.91931 * 15 13 11 18 18 H 1.48501 * 109.47302 * 324.91743 * 15 13 11 19 19 H 1.09000 * 109.46907 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47822 * 300.05270 * 1 2 3 21 21 H 1.09010 * 109.46863 * 60.05093 * 1 2 3 22 22 H 1.00902 * 110.99871 * 56.81940 * 4 2 1 23 23 H 1.09005 * 109.49037 * 299.35344 * 5 4 2 24 24 H 1.08998 * 109.51073 * 179.29870 * 5 4 2 25 25 H 1.09006 * 109.49078 * 181.63356 * 6 5 4 26 26 H 1.09007 * 109.48943 * 61.56660 * 6 5 4 27 27 H 1.08994 * 109.47295 * 54.18151 * 8 7 6 28 28 H 1.09003 * 109.47016 * 174.18570 * 8 7 6 29 29 H 1.09003 * 109.47055 * 294.18601 * 8 7 6 30 30 H 0.96994 * 120.00660 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 7 2.0204 -0.6937 -1.1992 5 6 3.4894 -0.7259 -1.2217 6 6 4.0004 -1.4482 0.0270 7 7 3.5100 -0.7546 1.2262 8 6 4.0419 -1.3743 2.4474 9 6 2.0410 -0.7223 1.2488 10 1 1.6551 -1.7417 1.2627 11 6 1.5730 0.0098 2.4801 12 1 1.8652 1.0369 2.6412 13 6 0.7719 -0.6317 3.4007 14 7 0.4669 -0.0379 4.5339 15 14 0.1193 -2.3441 3.0385 16 1 1.1356 -3.3539 3.4292 17 1 -1.1279 -2.5724 3.8116 18 1 -0.1686 -2.4674 1.5869 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5146 0.8894 21 1 -0.3633 0.5131 -0.8905 22 1 1.6550 -0.2680 -2.0379 23 1 3.8753 0.2935 -1.2357 24 1 3.8282 -1.2552 -2.1123 25 1 5.0904 -1.4479 0.0270 26 1 3.6367 -2.4758 0.0272 27 1 5.1293 -1.4177 2.3888 28 1 3.7480 -0.7811 3.3134 29 1 3.6427 -2.3838 2.5460 30 1 -0.0969 -0.4890 5.1815 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259775682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = 6.717581 kcal Electronic energy + Delta-G solvation = -12116.358540 eV Core-core repulsion = 10139.412148 eV Total energy + Delta-G solvation = -1976.946391 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.40326 -33.93068 -32.99834 -31.13622 -27.06201 -26.83569 -24.54645 -21.60437 -21.03968 -18.66895 -17.11850 -15.47709 -14.59768 -14.22732 -14.02783 -13.80381 -13.39913 -12.78250 -12.42087 -11.72463 -11.52781 -11.36615 -11.01016 -10.94963 -10.75960 -10.56186 -9.90710 -9.75272 -9.59919 -9.18237 -8.58551 -7.85793 -7.20699 -6.13447 -4.12295 3.25593 3.34934 3.40484 4.38003 4.79821 4.84376 5.33853 5.62121 5.73638 5.86429 6.05476 6.21445 6.23085 6.26463 6.39480 6.43241 6.48950 6.70420 6.82182 7.00764 7.11334 7.20602 7.43882 7.75783 7.93229 8.13244 8.20910 8.64118 8.97513 9.51230 10.98912 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040902 B = 0.019034 C = 0.016082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.395518 B = 1470.735415 C = 1740.672917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.096 3.904 3 H 0.036 0.964 4 N -0.697 5.697 5 C 0.065 3.935 6 C 0.051 3.949 7 N -0.541 5.541 8 C 0.043 3.957 9 C 0.188 3.812 10 H 0.014 0.986 11 C -0.497 4.497 12 H 0.078 0.922 13 C 0.079 3.921 14 N -0.893 5.893 15 Si 0.865 3.135 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.258 1.258 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.034 0.966 22 H 0.328 0.672 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -2.545 -8.440 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 H 0.054 0.946 4 N -0.328 5.328 5 C -0.064 4.064 6 C -0.078 4.078 7 N -0.267 5.267 8 C -0.105 4.105 9 C 0.082 3.918 10 H 0.032 0.968 11 C -0.536 4.536 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.530 5.530 15 Si 0.693 3.307 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.183 1.183 19 H 0.069 0.931 20 H 0.096 0.904 21 H 0.053 0.947 22 H 0.144 0.856 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.025 0.975 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.275 -2.704 -7.993 9.052 hybrid contribution -0.432 -0.904 -0.285 1.042 sum 2.843 -3.609 -8.279 9.468 Atomic orbital electron populations 1.21726 0.94882 1.01532 1.01028 1.21684 0.94728 0.95622 0.89270 0.94560 1.60716 1.07735 1.59072 1.05300 1.21855 0.88585 0.98770 0.97230 1.22122 0.98372 0.95717 0.91627 1.62466 1.12044 1.51715 1.00447 1.22088 0.96934 0.96700 0.94809 1.19793 0.83324 0.94996 0.93679 0.96805 1.20791 1.29715 1.00356 1.02724 0.90396 1.25031 0.95817 0.97141 0.94466 1.69899 1.37133 1.38500 1.07483 0.87080 0.78862 0.85535 0.79246 1.20528 1.21506 1.18285 0.93092 0.90382 0.94680 0.85556 0.95047 0.91708 0.91917 0.95609 0.93895 0.89655 0.97493 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.24 37.16 0.34 -2.38 16 2 C 0.10 2.07 2.69 -67.66 -0.18 1.89 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 4 N -0.70 -12.90 6.55 -106.59 -0.70 -13.60 16 5 C 0.07 1.11 6.72 -3.77 -0.03 1.09 16 6 C 0.05 0.95 5.62 -3.77 -0.02 0.93 16 7 N -0.54 -12.14 4.78 -236.12 -1.13 -13.27 16 8 C 0.04 0.93 9.23 60.07 0.55 1.48 16 9 C 0.19 4.57 1.43 -68.81 -0.10 4.47 16 10 H 0.01 0.37 4.75 -51.93 -0.25 0.12 16 11 C -0.50 -13.63 6.35 -34.44 -0.22 -13.85 16 12 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 15 Si 0.87 21.60 26.97 -169.99 -4.58 17.01 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.26 -6.30 5.82 56.52 0.33 -5.97 16 19 H 0.05 1.07 7.20 -51.93 -0.37 0.70 16 20 H 0.08 1.73 7.28 -51.93 -0.38 1.35 16 21 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 22 H 0.33 5.16 8.83 -39.29 -0.35 4.81 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 26 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.08 2.03 7.08 -51.93 -0.37 1.67 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 235.61 15.07 3.55 3.55 Total: -1.00 -29.39 235.61 -6.55 -35.94 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.72 Total: 0.35 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.25 Total: -4.26 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -1.05 Total: -52.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.58 Total: 17.01 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.39 -6.55 -35.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.662 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds